JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 10 2009
M. J. CARMONA
Abstract Cyclical parthenogens, which combine asexual and sexual reproduction, are good models for research into the ecological and population processes affecting the evolutionary maintenance of sex. Sex in cyclically parthenogenetic rotifers is necessary for diapausing egg production, which is essential to survive adverse conditions between planktonic growing seasons. However, within a planktonic season sexual reproduction prevents clonal proliferation. Hence, clones with a low propensity for sex should be selected, becoming dominant in the population as the growing season progresses. In this context, we studied the dynamics of the heritable variation in propensity for sexual reproduction among clones of a Brachionus plicatilis rotifer population in a temporary Mediterranean pond during the period the species occurred in plankton. Clonal isolates displayed high heritable variation in their propensity for sex. Moreover, the frequency of clones with low propensity for sex increased during the growing season, which supports the hypothesized short-term selection for low investment in sex within a growing season. These results demonstrate (1) the inherent instability of the cyclical parthenogenetic life cycle, (2) the cost of sexual reproduction in cyclical parthenogens where sex produces diapausing eggs and (3) the role of the association between sexual reproduction and diapause in maintaining sex in these cyclical parthenogens. [source]

Clonal and seasonal shifts in communities of saprotrophic microfungi and soil enzyme activities in the mycorrhizosphere of Salix spp.

JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE, Issue 4 2006
Christel Baum
Abstract The species-specific microbial root and rhizosphere colonization contributes essentially to the plant nutrient supply. The species number and colonization densities of cultivable saprotrophic microfungi and the activities of nutrient-releasing soil enzymes (protease, acid and alkaline phosphatase, arylsulfatase) were investigated in the rhizosphere of one low mycorrhizal (Salix viminalis) and one higher mycorrhizal (S. × dasyclados) willow clone at a Eutric Cambisol in N Germany. After soil washing, in total 32 and 28 saprotrophic microfungal species were isolated and identified microscopically from the rhizosphere of S.viminalis and S. × dasyclados, respectively. The fungal species composition changed within the growing season but the species number was always lower under S. × dasyclados than under S. viminalis. Under both willow clones, the fungal colonization density was largest in spring, and the species number was largest in autumn. Acid-phosphatase activity (p < 0.001) and protease activity (p < 0.003) were significantly affected by the Salix clone, whereas arylsulfatase and alkaline-phosphatase activities did not show clone-specific differences. All enzyme activities reached their maxima in the summer sampling. Rhizosphere colonization with Acremonium butyri,Cladosporium herbarum, and Penicillium janthinellum contributed significantly to explain the activities of acid phosphatase. Rhizosphere colonization with Cylindrocarpon destructans, Penicillium spinulosum, Plectosphaerella cucumerina, and Trichoderma polysporum contributed significantly to explain the arylsulfatase activities. Effects of the saprotrophic fungal colonization densities on the protease activities in the rhizosphere were low. Acid- and alkaline-phosphatase and arylsulfatase activities in the rhizosphere soil were stronger affected by the composition of the saprotrophic fungal communities than by the Salix clone itself. In conclusion, the colonization density of some saprotrophic microfungi in the rhizosphere contributed to explain shifts in soil-enzyme activities of the P and S cycles under different willow clones. [source]

Threatened Peripheral Populations in Context: Geographical Variation in Population Frequency and Size and Sexual Reproduction in a Clonal Woody Shrub

CONSERVATION BIOLOGY, Issue 3 2007
SARAH B. YAKIMOWSKI
especies en riesgo; límites de distribución; poblaciones periféricas; reproducción sexual; Vaccinium stamineum Abstract:,Geographically peripheral populations of widespread species are often the focus of conservation because they are locally rare within political jurisdictions. Yet the ecology and genetics of these populations are rarely evaluated in a broader geographic context. Most expectations concerning the ecology and evolution of peripheral populations derive from the abundant-center model, which predicts that peripheral populations should be less frequent, smaller, less dense, and have a lower reproductive rate than central populations. We tested these predictions and in doing so evaluated the conservation value of peripheral populations for the clonal shrub Vaccinium stamineum L. (Ericaceae, deerberry), which is listed as threatened in Canada. Based on 51 populations sampled from the center to the northern range limits over 2 years, population frequency and size declined toward the range limit, but ramet density increased. Sexual reproductive output varied widely among populations and between years, with many populations producing very few seeds, but did not decline toward range margins. In fact seed mass increased steadily toward range limit, and this was associated with faster germination and seedling growth, which may be adaptive in seasonal northern environments. Our results did not support the prediction that clonal reproduction is more prevalent in peripheral populations or that it contributed antagonistically to the wide variation in seed production. Peripheral populations of V. stamineum are as productive as central populations and may be locally adapted to northern environments. This emphasizes the importance of a broad geographical perspective for evaluating the ecology, evolution, and conservation of peripheral populations. Resumen:,Las poblaciones geográficamente periféricas de una especie de amplia distribución a menudo son el foco de conservación porque son raras localmente dentro de jurisdicciones políticas. Sin embargo, la ecología y genética de estas poblaciones son evaluadas poco frecuentemente en un contexto geográfico más amplio. La mayoría de las expectaciones relacionadas con la ecología y evolución de las poblaciones periféricas se derivan del modelo centro-abundante, que predice que las poblaciones periféricas son menos frecuentes, más pequeñas, menos densas y menor tasa reproductiva que poblaciones centrales. Probamos estas predicciones y al hacerlo evaluamos el valor de conservación de poblaciones periféricas de una especie de arbusto clonal (Vaccinium stamineum L., Ericaceae), que está enlistada como amenazada en Canadá. Con base en 51 poblaciones muestreadas del centro hacia los límites norteños de su distribución durante 2 años, la frecuencia y tamaño poblacional declinó hacia los límites de su distribución, pero la densidad de rametos aumentó. La reproducción sexual varió ampliamente entre las poblaciones y entre años, con muchas poblaciones produciendo muy pocas semillas, pero no declinó hacia los límites de su distribución. De hecho, la masa de semillas incrementó sostenidamente hacia los límites, y esto se asoció a una acelerada germinación y crecimiento de plántulas, lo cual puede ser adaptativo en ambientes norteños estacionales. Nuestros resultados no sustentaron la predicción de que la reproducción clonal es más prevaleciente en poblaciones periféricas o que contribuye antagónicamente a la amplia variación en la producción de semillas. Las poblaciones periféricas de V. stamineum son tan productivas como las poblaciones centrales y pueden estar adaptadas localmente a ambientes norteños. Esto enfatiza la importancia de una perspectiva geográfica amplia cuando se evalúa la ecología, evolución y conservación de poblaciones periféricas. [source]

Expression of multiple P2Y receptors by MDCK-D1 cells: P2Y1 receptor cloning and signaling

DRUG DEVELOPMENT RESEARCH, Issue 1 2003
Richard J. Hughes
The Madin Darby canine kidney (MDCK) cell line, a well-differentiated renal epithelial cell line, is a useful model to examine P2Y receptor signaling and response. Our studies with MDCK-D1, a clonal isolate, demonstrate that these cells release ATP in response to mechanical stimulation and activation of certain G-protein-coupled receptors. Reverse transcriptase-polymerase chain reaction (RT-PCR) studies document that MDCK cells express multiple P2Y receptors, including P2Y1, P2Y2, P2Y6, and P2Y11 receptors. We isolated cDNAs for several of the P2Y receptor genes and expressed these in cells, such as the 1321N1 astrocytoma cell line, that lack native P2Y receptor expression. We report here the molecular cloning of the MDCK P2Y1 receptor, heterologous expression in 1321N1 cells, and the ability of the heterologously expressed receptors to increase intracellular calcium and phosphoinositide hydrolysis. ADP, methylthioATP, and ADP,S are agonists with the greatest potency, while ATP and ATP,S show lower potency and efficacy, and benzoylbenzoylATP, UTP, and UDP lack efficacy at the cloned P2Y1 receptor. Several antagonists, including MRS2179, A3P5PS, suramin, and PPADS blocked response at the cloned P2Y1 receptors. With their ability to respond to ADP and ATP, P2Y1 receptors, along with other P2Y receptors expressed in MDCK cells, contribute to the response of these cells to ATP (or its breakdown product, ADP) released from the cells and to exogenously added nucleotides. Drug Dev. Res. 59:1,7, 2003. © 2003 Wiley-Liss, Inc. [source]

Clonal expansions of 6-thioguanine resistant T lymphocytes in the blood and tumor of melanoma patients,

ENVIRONMENTAL AND MOLECULAR MUTAGENESIS, Issue 9 2008
Mark R. Albertini
Abstract The identification of specific lymphocyte populations that mediate tumor immune responses is required for elucidating the mechanisms underlying these responses and facilitating therapeutic interventions in humans with cancer. To this end, mutant hypoxanthine-guanine phosphoribosyltransferase (HPRT) deficient (HPRT -) T-cells were used as probes to detect T-cell clonal amplifications and trafficking in vivo in patients with advanced melanoma. Mutant T-cells from peripheral blood were obtained as clonal isolates or in mass cultures in the presence of 6-thioguanine (TG) selection and from tumor-bearing lymph nodes (LNs) or metastatic melanoma tissues by TG-selected mass cultures. Nonmutant (wild-type) cells were obtained from all sites by analogous means, but without TG selection. cDNA sequences of the T-cell receptor (TCR) beta chains (TCR-,), determined directly (clonal isolates) or following insertion into plasmids (mass cultures), were used as unambiguous biomarkers of in vivo clonality of mature T-cell clones. Clonal amplifications, identified as repetitive TCR-, V-region, complementarity determining region 3 (CDR3), and J-region gene sequences, were demonstrated at all sites studied, that is, peripheral blood, LNs, and metastatic tumors. Amplifications were significantly enriched among the mutant compared with the wild-type T-cell fractions. Importantly, T-cell trafficking was manifested by identical TCR-, cDNA sequences, including the hypervariable CDR3 motifs, being found in both blood and tissues in individual patients. The findings described herein indicate that the mutant T-cell fractions from melanoma patients are enriched for proliferating T-cells that infiltrate the tumor, making them candidates for investigations of potentially protective immunological responses. Environ. Mol. Mutagen., 2008. Published 2008 Wiley-Liss, Inc. [source]

Assessment of peripheral blood lymphocyte subsets in idiopathic myelofibrosis

EUROPEAN JOURNAL OF HAEMATOLOGY, Issue 2 2000
Francisco Cervantes
Abstract: The objective of this study was to contribute to a better characterization of the immunological profile of idiopathic myelofibrosis (IM) at presentation by analysing the blood lymphocyte subsets and their possible correlations with other disease features. Absolute blood lymphocytes and lymphocyte subsets were assessed in 31 IM patients, compared with those from 34 healthy individuals, and correlated with the patients' main clinical, hematological and bone marrow histologic features. The mean lymphocyte count of the IM patients was 1.1 (SD 0.6)×109/L, versus 1.6 (SD 0.49)×109/L in controls (p=0.0006), with 24 of the 31 patients (77.4%) showing lymphocytopenia (<1.5×109/L). IM patients had significantly lower counts of CD3, CD4, CD8, and CD3,/CD56+ cells, and significantly higher CD3+/CD56+ lymphocyte counts. Although no significant differences were found between patients and controls with regard to CD19+/CD5+ cell counts, increased CD5+ B-cell lymphocytes were observed in three IM patients. In one of the latter patients, Ig gene rearrangement analysis of the heavy chain gene demonstrated such a subpopulation to be clonal, but the patient did not develop features of chronic lymphoid leukemia during a 5-yr follow-up. No correlation was found between the patients' blood lymphocyte counts and other disease features. We conclude that most IM patients have absolute lymphopenia, decreased T cells and increased cytotoxic T cells at diagnosis, and 10% of them show an increased CD5+ B-cell subpopulation. [source]

Multispecific responses by T cells expanded by endogenous self-peptide/MHC complexes

EUROPEAN JOURNAL OF IMMUNOLOGY, Issue 3 2007
Guifang Cai
Abstract The paradox of autoreactivity to self-peptides in physiological as opposed to pathological immune responses is not well understood. Here, we directly examined the human T cell response to endogenous self-peptides in a series of healthy subjects. CFSE-labeled T cells were stimulated with unmanipulated antigen-presenting cells containing endogenous self-antigen, and the resulting CD4+ populations entering into cell cycle (CFSElow) or non-proliferating CD4+ cells (CFSEhigh) were single-cell sorted, cloned and screened against a panel of self-antigens and microbial recall antigens to interrogate their antigen reactivity. The percentage of CD4+ T cells entering cell cycle in response to self-peptide/MHC was calculated to be 0.04%, and entry into cell cycle was dependent upon CD28 costimulation. Clones derived from CFSElow T cells exhibited significantly greater cross-reactivity to multiple antigens than CFSEhigh clones or other CD4+ clones generated after microbial antigen stimulation. Sequencing the TCR, chains indicated that CFSElow clones were indeed clonal. These data demonstrate that T cell clones generated on stimulation by endogenous self-peptides exhibit a high degree of multispecificity, and we speculate that their multispecificity is based upon recognition of shared-backbone MHC determinants. [source]

FREQUENCY AND SPATIAL PATTERNING OF CLONAL REPRODUCTION IN LOUISIANA IRIS HYBRID POPULATIONS

EVOLUTION, Issue 1 2000
John M. Burke
Abstract., The plant genera in which natural hybridization is most prevalent tend to be outcrossing perennials with some mechanism for clonal (i.e., asexual) reproduction. Although clonal reproduction in fertile, sexually reproducing hybrid populations could have important evolutionary consequences, little attention has been paid to quantifying this parameter in such populations. In the present study, we examined the frequency and spatial patterning of clonal reproduction in two Louisiana iris hybrid populations. Allozyme analysis of both populations revealed relatively high levels of genotypic diversity. However, a considerable amount of clonality was apparent. Nearly half of all genets (47%) in one population and more than half (61%) in the other had multiple ramets. Furthermore, both populations exhibited relatively high levels of genetic structuring, a pattern that resulted from the aggregation of clonal ramets. The occurrence of clonal reproduction in hybrid populations could not only facilitate introgression through an increase in the number of flowering ramets per genet and/or the survivorship of early generation hybrids, but might also influence the mating system of such populations. Any potential increase in the selfing rate due to cross-pollination among ramets of the same genet may, in turn, increase the likelihood of homoploid hybrid speciation. [source]

Dominance of a clonal green sulfur bacterial population in a stratified lake

FEMS MICROBIOLOGY ECOLOGY, Issue 1 2009
Lea H. Gregersen
Abstract For many years, the chemocline of the meromictic Lake Cadagno, Switzerland, was dominated by purple sulfur bacteria. However, following a major community shift in recent years, green sulfur bacteria (GSB) have come to dominate. We investigated this community by performing microbial diversity surveys using FISH cell counting and population multilocus sequence typing [clone library sequence analysis of the small subunit (SSU) rRNA locus and two loci involved in photosynthesis in GSB: fmoA and csmCA]. All bacterial populations clearly stratified according to water column chemistry. The GSB population peaked in the chemocline (c. 8 × 106 GSB cells mL,1) and constituted about 50% of all cells in the anoxic zones of the water column. At least 99.5% of these GSB cells had SSU rRNA, fmoA, and csmCA sequences essentially identical to that of the previously isolated and genome-sequenced GSB Chlorobium clathratiforme strain BU-1 (DSM 5477). This ribotype was not detected in Lake Cadagno before the bloom of GSB. These observations suggest that the C. clathratiforme population that has stabilized in Lake Cadagno is clonal. We speculate that such a clonal bloom could be caused by environmental disturbance, mutational adaptation, or invasion. [source]

Increased genomic instability and altered chromosomal protein phosphorylation timing in HRAS -transformed mouse fibroblasts

GENES, CHROMOSOMES AND CANCER, Issue 5 2009
Katherine L. Dunn
The RAS-mitogen-activated protein kinase signaling pathway is often deregulated in cancer cells. In metastatic HRAS -transformed mouse fibroblasts (Ciras-3), the RAS-MAPK pathway is constitutively activated. We show here that Ciras-3 cells exhibit a higher incidence of chromosomal instability than 10T1/2 cells, including higher levels of clonal and nonclonal chromosomal aberrations. Stimulation of serum starved 10T1/2 and Ciras-3 cells with phorbol esters (TPA) results in the phosphorylation of histone H3 at serine 10 and serine 28. Regardless of the increased genomic instability in Ciras-3 cells, TPA-induced H3 phosphorylated at serine 10 and H3 phosphorylated at serine 28 partitioned into distinct nuclear subdomains as they did in the parental cells. However, the timing of the response of the H3 phosphorylation event to TPA induction was delayed in Ciras-3 cells. Further Ciras-3 cells, which have a more open chromatin structure, had increased steady state levels of phosphorylated H3 and HMGN1 relative to parental 10T1/2 cells. TPA-induced H3 phosphorylated at serine 10 and 28 were colocalized with the transcriptionally initiated form of RNA polymerase II in 10T1/2 and Ciras-3 cells. Chromatin immunoprecipitation assays demonstrated that TPA-induced H3 phosphorylation at serine 28 was associated with the immediate early JUN promoter, providing direct evidence that this histone post-translational modification is associated with transcriptionally active genes. Together our results demonstrate the increased genomic instability and alterations in the epigenetic program in HRAS -transformed cells. © 2009 Wiley-Liss, Inc. [source]

Fusion of ALK to the Ran-binding protein 2 (RANBP2) gene in inflammatory myofibroblastic tumor

GENES, CHROMOSOMES AND CANCER, Issue 1 2003
Zhigui Ma
Inflammatory myofibroblastic tumor (IMT) is a rare mesenchymal proliferation of transformed myofibroblasts, with a prominent inflammatory cell component, that can mimic other spindle cell processes such as nodular fasciitis, desmoid tumor, and gastrointestinal stromal tumor. Genetic analyses have recently demonstrated rearrangements of anaplastic lymphoma kinase (ALK), located at 2p23, in a subset of IMTs. Molecular characterizations have identified ALK fusions involving tropomyosin-3 and -4 (TPM-3 and -4), the clathrin heavy chain (CLTC), and the cysteinyl-tRNA synthetase (CARS) genes as fusion partners. Here we describe two IMTs with a novel ALK fusion that involves the Ran-binding protein 2 (RANBP2) gene at 2q13, which normally encodes a large (358-kDa) nucleopore protein localized at the cytoplasmic side of the nuclear pore complex. The N-terminal 867 residues of RANBP2 are fused to the cytoplasmic segment of ALK in the 1,430,amino acid RANBP2-ALK chimeric protein. Myofibroblasts that express RANBP2-ALK exhibit nuclear membrane-associated ALK staining that is unique compared to the subcellular localization observed with other ALK fusions in IMT, presumably attributable to heteroassociation of the fusion with normal RANBP2 at the nuclear pore. These findings expand the spectrum of ALK abnormalities observed in IMT and further confirm the clonal, neoplastic nature of these lesions. © 2003 Wiley-Liss, Inc. [source]

Karyotypic similarity identified by multiplex-FISH relates four prostate adenocarcinoma cell lines: PC-3, PPC-1, ALVA-31, and ALVA-41

GENES, CHROMOSOMES AND CANCER, Issue 4 2001
Marileila Varella-Garcia
Recently developed molecular cytogenetic techniques for karyotyping are providing new and important insights regarding the chromosomal changes that occur in solid tumors. We used multiplex-FISH to analyze four adenocarcinoma cell lines, PC-3, PPC-1, ALVA-31, and ALVA-41, in which the characterization of a large number of rearranged chromosomes was partially or substantially inconclusive by G-banding. Although the original descriptions of these lines depict them as distinct entities established from different patients, this study demonstrates that these four lines share numerous, highly rearranged chromosomes, strongly supporting the conclusion that they are derived from the same patient material. Our analysis indicates that PPC-1, ALVA-31, and ALVA-41 were derived from PC-3 through mechanisms involving clonal progression represented by sequential changes and clonal diversion represented by differing patterns of changes. Extensive cellular heterogeneity was detected in all four lines, and most rearrangements included segments derived from multiple chromosomes. Each line also showed a set of unique derivative chromosomes. However, a limited number of metaphase cells (approximately 10) was analyzed for each line, and numerous single-cell abnormalities were detected in all of them. Therefore, it is plausible that the number of clonal, shared, and/or unique rearrangements has been underestimated. These cell lines have been utilized as models for understanding the biology of prostate cancer and reportedly differ in their cell physiology. Rather than detracting from their value, a complete understanding of the interrelationships of these lines to one another may provide the opportunity to define the molecular changes that have led to their individual malignant phenotypes. © 2001 Wiley-Liss, Inc. [source]

Why does the unimodal species richness,productivity relationship not apply to woody species: a lack of clonality or a legacy of tropical evolutionary history?

GLOBAL ECOLOGY, Issue 3 2008
Lauri Laanisto
ABSTRACT Aim, To study how differences in species richness patterns of woody and herbaceous plants may be influenced by ecological and evolutionary factors. Unimodal species richness,productivity relationships (SRPRs) have been of interest to ecologists since they were first described three decades ago for British herbaceous vegetation by J. P. Grime. The decrease in richness at high productivity may be due to competitive exclusion of subordinate species, or diverse factors related to evolution and dispersal. Unimodal SRPRs are most often reported for plants, but there are exceptions. For example, unimodal SRPRs are common in the temperate zone but not in the tropics. Similarly, woody species and forest communities in the Northern Hemisphere do not tend to show unimodal SRPRs. Location, Global. Methods, We used data from the literature to test whether a unimodal SRPR applies to woody species and forest communities on a global scale. We explored whether the shape of SRPRs may be related to the lack of clonality in woody species (which may prevent their being competitively superior), or the legacy of evolutionary history (most temperate woody species originate from tropical lineages, and due to niche conservatism they may still demonstrate ,tropical patterns'). We used case studies that reported the names of the dominant or most abundant species for productive sites. Results, Woody species were indeed less clonal than herbaceous species. Both clonality and the temperate evolutionary background of dominating species were associated with unimodality in SRPRs, with woodiness modifying the clonality effect. Main conclusions, The unimodal SRPR has been common in the ecological literature because most such studies originate from temperate herbaceous communities with many clonal species. Consequently, both evolutionary and ecological factors may influence species richness patterns. [source]

Monoclonal antibody fluorescence for routine lymphocyte subpopulation analysis with the Abbott CELL-DYN Sapphire haematology analyser

INTERNATIONAL JOURNAL OF LABORATORY HEMATOLOGY, Issue 6 2007
T. MOLERO
Summary Using previously described procedures, this study quantified T-cell, T-cell subset, B-cell and NK-cell populations with the CD-Sapphire haematology analyser in a series of patients with mild to moderate lymphocytosis. Lymphocyte counts ranged from 6.0 to 14.9 × 109/l, with 86/97 being <10.0 × 109/l. Immunophenotyping (CD3/CD19/HLA-DR, CD4/CD8 and CD16/CD56 combinations) was performed using EDTA-anticoagulated blood, automated CD-Sapphire analysis and subsequent software processing. Of 35 samples from younger (<12 years) patients, 22 (63%) had nonspecific lymphocyte changes, 4 (11%) showed specific increases in nonreactive T-Helper or T-Suppressor cells, and five showed a reactive T-cell lymphocytosis. The remaining four were classified as ,Transient/Persistent NK-associated (NKa) Expansion' (n = 3) and specific B-cell lymphocytosis (n = 1). For older patients (n = 59), 15 (25%) had an increase (>1.5 × 109/l) in B-cells, and seven investigated for surface immunoglobulin expression were all found to be clonal. The remaining samples were categorized as ,Transient/Persistent NK-associated (NKa) Expansion' (13/59), Reactive Lymphocytosis (5/59), ,Reactive Lymphocytosis or Transient/Persistent NKa Expansion' (8/59), specific T-Helper cell (n = 8) or T-Suppressor cell (n = 3) lymphocytosis, and ,Lymphocytosis of Undetermined Significance' (n = 7). This study has demonstrated the feasibility of applying limited immunophenotyping protocols to the investigation of patients with abnormal lymphocyte counts in routine haematology. By using commercially purchased liquid monoclonal reagents to determine lymphocyte subpopulation profiles, haematology laboratories can provide more definitive information of potential clinical importance. [source]

Biogeography of the Amazon molly, Poecilia formosa

JOURNAL OF BIOGEOGRAPHY, Issue 1 2002
Ingo Schlupp
Aim The unisexual Amazon molly (Poecilia formosa) is a clonal, all-female fish but depends on sperm of heterospecific males to trigger embryogenesis. Thus, one very important factor shaping its geographical range is the presence of suitable host males. Several species of the genus Poecilia from Central America, Mexico and the USA can provide sperm in the laboratory, but are not utilized as hosts in nature. Consequently the potential geographic range of the Amazon molly is much larger than the actual range. This raises the question of what is responsible for the biogeographical range of the Amazon molly? Location Southern USA, Mexico and Central America. Methods We review the current data available for the distribution of the Amazon molly. We further tested whether salinity might hinder the dispersal of the species. Results Amazon mollies tolerate marine conditions. We review the available data on recent and human influenced introductions of Amazon mollies. Main conclusions We argue that male preferences are not responsible for the current range. We propose that prevailing near-shore marine currents act as an effective barrier against further dispersal. Furthermore, we discuss recent changes in the biogeography of the Amazon molly. [source]

Severely reduced sexual reproduction in northern populations of a clonal plant, Decodonverticillatus (Lythraceae)

JOURNAL OF ECOLOGY, Issue 3 2001
Marcel E. Dorken
Summary 1,In flowering plants the balance between sexual and clonal, asexual reproduction can vary widely. We quantified variation in sexual reproduction in a tristylous, clonal, aquatic plant, Decodon verticillatus, and investigated the role of ecological and genetic factors in causing this variation. 2,We surveyed components of sexual fertility and vegetative growth in 28 populations distributed along a 500-km latitudinal transect in New England, USA. Northerly populations tend to be monomorphic (M) for style length, and probably therefore have reduced sexual reproduction compared with southerly, trimorphic (T) populations. 3,Compared with T populations (n = 10), M populations (n = 18) exhibited large reductions for all components of sexual reproduction, including flower production, pollen deposition, pollen tube growth, fertilization, fruit set and seeds per fruit. Seven M populations produced no seed at all, and the other 11 very little (mean = 24 vs. 1139 seeds per plant in trimorphic populations). Clonal propagation was also greatly reduced in M populations. 4,A survey of three polymorphic allozyme loci detected only single, usually heterozygous, genotypes in 15 M populations, whereas all T populations were genotypically diverse. The other three M populations contained three or fewer genotypes and one always predominated. Sexual recruitment is therefore extremely rare. 5,Comparison of the sexual fertility of M and T populations in a concurrent common glasshouse experiment with our field data revealed that reduced sexual performance in northern M populations is principally due to genetic factors, but is also caused by ecological factors that covary with latitude. 6,This abrupt shift away from sexual reproduction in populations at the northern periphery of the geographical range in D. verticillatus may greatly limit their evolutionary potential and restrict further northward expansion. [source]

Clonal erosion and genetic drift in cyclical parthenogens , the interplay between neutral and selective processes

JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 5 2010
J. VANOVERBEKE
Abstract The occurrence of alternating phases of clonal and sexual reproduction may strongly impact the interplay between neutral and selective genetic variation in populations. Using a physiologically structured model of the life history of Daphnia, we investigated to what extent clonal erosion associated with selection during the clonal phase affects the genetic structure as observed by neutral markers. Incorporating conservative levels of quantitative genetic variation at 11 physiological and life history traits induces strong clonal erosion, reducing clonal diversity (CD) near the end of the simulations (1000 days) to a level between 1 and 5, even in habitats with high initial CD (108 clones). This strong clonal erosion caused by selection can result in reduced genetic diversity, significant excess of heterozygotes and significant genetic differentiation between populations as observed by neutral markers. Our results indicate that, especially in relatively small habitats, clonal selection may strongly impact the genetic structure and may contribute to the often observed high level of neutral genetic differentiation among natural populations of cyclical parthenogens. [source]

Reproductive performance of clonal and sexual bark beetles (Coleoptera: Scolytidae) in the field

JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 5 2000
Løyning
In Ips acuminatus (Gyll.) parthenogenetic females occur together with sexual females and with sexual males upon which they depend for sperm. In a reciprocal-transplant experiment, I studied fecundity differences among parthenogenetic and sexual females from two populations that differ dramatically in the proportion of clonal females. In a second experiment, I studied competition between larvae from different mothers and between females from the two source populations. Fecundity measured by the number of eggs per egg tunnel was influenced by the ambient environment at the sites of the experiment as well as the origin of the female, and was generally higher for clonal than for sexual females at both sites. In experimental groups where larvae competed with larvae from their own population (pure treatments), the number of surviving pupae was significantly lower than in groups where females from the two source populations were mixed. The high fecundity of clonal females makes coexistence of the two types of females difficult to explain. It makes the reproductive advantage associated with clonality in I. acuminatus even higher than the two-fold difference due to asexuality per sé. The significant differences in the number of pupae in mixed vs. pure groups suggest ecological divergence between sexual and clonal females. This would make the mortality of larvae not only density dependent, but also frequency dependent, which could explain the coexistence of sexual and clonal females. [source]

Fish mitochondrial genomics: sequence, inheritance and functional variation

JOURNAL OF FISH BIOLOGY, Issue 2 2008
K. H. Brown
Mitochondrial genomic research currently primarily focuses on the analysis and understanding of how mitochondrial mutations produce detrimental phenotypes in humans. Reasons for this focus on negative impacts include the large number of human diseases that are known to result from specific mitochondrial genomes, and the long held belief that mitochondria change only through the accumulation of mutations due to its clonal, maternal inheritance. Recent studies are beginning to challenge these preconceptions and have shown that mitochondrial genomes can have significant positive impacts. Although the number of studies using fishes as models in mitochondrial research is limited, many fish model species provide excellent opportunity for furthering the understanding of mitochondrial genomes, their interactions with the nuclear genome, the potential for understanding the mechanisms of how functional variation effects organisms and how selection for positive functional variation effects population variation. [source]

CLO-PLA: the database of clonal and bud bank traits of Central European flora,

JOURNAL OF VEGETATION SCIENCE, Issue 3 2009
Jitka Klime
Abstract: Clonal growth of plants is mainly a result of the vegetative growth of organs hidden beneath the soil surface and producing potentially independent vegetative offspring. Clonal traits are difficult to measure due to inaccessibility of the space they inhabit and their morphological diversity. This causes great difficulties with descriptions, standardization of measurements across plant growth forms and, probably, a lack of appropriate questions that should be answered using them. The freely available CLO-PLA database (http://clopla.butbn.cas.cz/) can help to assess the roles of vegetative means of regeneration and spread in plant communities under the effect of various biotic and abiotic filters. It can serve as a source of reference on persistence traits of European temperate flora and, eventually, as a guide for trait sampling in other regions of the world. [source]

Novel initiation genes in squamous cell carcinomagenesis: A role for substrate-specific ubiquitylation in the control of cell survival

MOLECULAR CARCINOGENESIS, Issue 8 2007
Amador Albor
Abstract The study of experimental epidermal carcinogenesis offers several advantages over other epithelial carcinogenesis models, including easy accessibility and a database of research findings spanning over a century. Our studies make use of a clonal in vitro/in vivo keratinocyte carcinogenesis model with low frequency of ras mutation and derivative clonal-initiated lineages with distinct tumor fate. Analysis of this model has yielded candidate genes involved in the stages of initiation and tumorigenic progression, and has revealed novel roles for ubiquitylation in transcriptional control of survival and apoptotic pathways during the early stages of carcinogenesis. The expression of a recently described E3-ubiquitin ligase, Trim32, is elevated during initiation, and ectopic expression of Trim32 confers extended survival in response to terminal differentiation and ultraviolet light (UV) B/TNF-, death signals. Trim32 binds and ubiquitylates Piasy, controlling its stability and accumulation. Piasy is a SUMOylation factor involved in the control of apoptosis, senescence, and NF-,B activation. NF-,B is a survival factor for keratinocytes in response to UV irradiation, the main carcinogenic stimulus for the epidermis. Piasy inhibits NF-,B activity, and promotes keratinocyte apoptosis in response to UV and TNF-,. In human skin squamous cell carcinoma (SCC) samples, we found an inverse correlation between Trim32 and Piasy expression supporting a role for Trim32,Piasy interaction in human epidermal carcinogenesis. Our hypothesis is that increased expression of Trim32 may enhance epidermal carcinogenesis, by increasing the threshold of NF-,B activity through Piasy downmodulation. © 2007 Wiley-Liss, Inc. [source]

Major histocompatibility complex variability in the clonal Amazon molly, Poecilia formosa: is copy number less important than genotype?

MOLECULAR ECOLOGY, Issue 6 2009
K. P. LAMPERT
Abstract The evolution of sex is still a major unsolved puzzle in biology. One of the most promising theoretical models to answer this question is the Red Queen hypothesis. The Red Queen hypothesis proposes a fast adaptation of pathogens to common genotypes and therefore a negative frequency-dependent selection against common genotypes. Clonal organisms should be especially endangered when co-occurring with closely related sexual species. In this context, major histocompatibility (MHC) genes have been discussed to be auspicious candidates that could provide the genetic basis on which selection for immune competence could act. In this study, we investigated MHC variability in a clonal teleost fish: the Amazon molly, Poecilia formosa. The Amazon molly is an ideal candidate to test the Red Queen hypothesis as it is a clonal species but co-occurs with a closely related sexual species and should therefore be especially susceptible to pathogen infection. We found that allele numbers did in general not differ between sexual and clonal ,species' but that genotypic variability is reduced in the clonally reproducing fish, especially in the polyploids. We conclude that in clonal organisms, genotype frequency might be more important for immune competence than MHC allele number. Amazon mollies and their co-occurring parental species clearly fulfil a prerequisite of the Red Queen hypothesis and should therefore provide an ideal system to experimentally test this basic principle probably underlying the evolution of sex. [source]

Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates

MOLECULAR ECOLOGY, Issue 24 2007
DANIEL J. THORNHILL
Abstract Molecular approaches have revolutionized our ability to study the ecology and evolution of micro-organisms. Among the most widely used genetic markers for these studies are genes and spacers of the rDNA operon. However, the presence of intragenomic rDNA variation, especially among eukaryotes, can potentially confound estimates of microbial diversity. To test this hypothesis, bacterially cloned PCR products of the internal transcribed spacer (ITS) region from clonal isolates of Symbiodinium, a large genus of dinoflagellates that live in symbiosis with many marine protists and invertebrate metazoa, were sequenced and analysed. We found widely differing levels of intragenomic sequence variation and divergence in representatives of Symbiodinium clades A to E, with only a small number of variants attributed to Taq polymerase/bacterial cloning error or PCR chimeras. Analyses of 5.8S-rDNA and ITS2 secondary structure revealed that some variants possessed base substitutions and/or indels that destabilized the folded form of these molecules; given the vital nature of secondary structure to the function of these molecules, these likely represent pseudogenes. When similar controls were applied to bacterially cloned ITS sequences from a recent survey of Symbiodinium diversity in Hawaiian Porites spp., most variants (~87.5%) possessed unstable secondary structures, had unprecedented mutations, and/or were PCR chimeras. Thus, data obtained from sequencing of bacterially cloned rDNA genes can substantially exaggerate the level of eukaryotic microbial diversity inferred from natural samples if appropriate controls are not applied. These considerations must be taken into account when interpreting sequence data generated by bacterial cloning of multicopy genes such as rDNA. [source]

Genetic enrichment of the arctic clonal plant Saxifraga cernua at its southern periphery via the alpine sexual Saxifraga sibirica

MOLECULAR ECOLOGY, Issue 11 2006
MAXIM V. KAPRALOV
Abstract Isolation of populations at the margins of a species range may lead to decreasing genetic diversity via genetic drift and inbreeding. Hybridization between peripheral populations of two species can, however, counteract genetic impoverishment. The mainly clonal, polyploid plant Saxifraga cernua has a wide arctic distribution but also extends southwards into alpine sites. In the Ural Mountains, its peripheral distribution overlaps with that of its sexually reproducing, diploid relative Saxifraga sibirica, and fertile polyploids of more or less intermediate appearance are found in this overlap zone. We used amplified fragment length polymorphism (AFLP) analysis to address the potential impact of interspecific gene flow on genetic diversity in the peripheral populations. A total of 149 plants from 17 populations along a 1650 km south,north gradient were analysed for 253 markers. The results suggest that three Middle Ural populations containing fertile and morphologically more or less intermediate plants have been affected by hybridization. All of these plants formed a strongly supported (100%) group with S. cernua in a neighbour-joining tree, but their AFLP phenotypes assigned either to S. cernua or to artificial (simulated) F1 hybrids between S. cernua and S. sibirica in multilocus assignment tests. The three populations were highly diverse with virtually every plant representing a distinct AFLP phenotype, providing additional evidence for formation of later-generation hybrids and/or backcrossing to S. cernua. In contrast, other peripheral populations of S. cernua were typically monoclonal, suggesting that hybridization with S. sibirica can increase genetic diversity in S. cernua at its southern periphery. [source]

Genetic variation in the Desert Springsnail (Tryonia porrecta): implications for reproductive mode and dispersal

MOLECULAR ECOLOGY, Issue 6 2005
R. HERSHLER
Abstract Allozymes and mitochondrial cytochrome c oxidase subunit I (mtCOI) sequences were analysed to determine whether populations of the western North American gastropod Tryonia porrecta (from California, Nevada, Utah, and northwest Mexico) are strongly differentiated in accordance with traditional interpretation of regional fauna as ancient relicts inhabiting isolated fragments of late Tertiary palaeodrainages. These data were also used to assess whether this species, for which males have not been recorded, is a rare example of a molluscan parthenogen. Both data sets strongly supported monophyly of T. porrecta populations. Five of the nine sampled populations consisted of a single monoallelic allozyme genotype while the others contained two to 10 distinct genotypes. Allozymic data for genetically diverse Utah populations provided evidence of clonal and sexual reproduction. mtCOI haplotypes of T. porrecta formed two subgroups which differed by 1.99,2.60%. The common haplotype was found in seven populations with rare haplotypes observed in single populations. Based on these results and an available mtCOI molecular clock for related hydrobiid snails, T. porrecta is interpreted as a primarily parthenogenetic species that undergoes occasional sexual reproduction and has accumulated substantial diversity following its mid-Pliocene to mid-Pleistocene origin. Our results also suggest that the distribution of present-day populations of these gill-breathing snails did not result from fragmentation of an ancient, well-integrated drainage but instead reflects overland colonization of habitats which only recently became available following desiccation of late Quaternary pluvial lakes. [source]

The root rot fungus Armillaria mellea introduced into South Africa by early Dutch settlers

MOLECULAR ECOLOGY, Issue 2 2001
Martin P. A. Coetzee
Abstract Dead and dying oak (Quercus) and numerous other woody ornamental trees and shrubs showing signs and symptoms of Armillaria root rot were identified in the Company Gardens, Cape Town, South Africa, which were established in the mid-1600s by the Dutch East Indies Trading Company. Nineteen isolates from dying trees or from mushrooms were collected and analysed to identify and characterize the Armillaria sp. responsible for the disease. The AluI digestion of the amplified product of the first intergenic spacer region (IGS-1) of the rRNA operon of 19 isolates from the Company Gardens was identical to that of some of the European isolates of A. mellea s. s. The IGS-1 region and the internal transcribed spacers (ITS) were sequenced for some of the Cape Town isolates. Phylogenetic analyses placed the Cape Town isolates in the European clade of A. mellea, which is distinct from the Asian and North American clades of this species. Identification based on sexual compatibility was conducted using A. mellea tester strains in diploid,haploid pairings, which showed some compatibility between the Cape Town isolates and testers from Europe. Somatic compatibility tests (diploid,diploid pairings) and DNA fingerprinting with multilocus, microsatellite probes indicated that the Cape Town isolates were genetically identical and may have resulted from vegetative (clonal) spread from a single focus in the centre of the original Company Gardens (c. 1652). The colonized area is at least 345 m in diameter. Assuming a linear spread rate underground of 0.3 m/year to 1.6 m/year, the genet (clone) was estimated to be between 108 and 575 years old. These data suggest that A. mellea was introduced into Cape Town from Europe, perhaps on potted plants, such as grapes or citrus, planted in the Company Gardens more than 300 years ago. [source]

Comparison of measured growth rates with those calculated from rates of photosynthesis in Planktothrix spp. isolated from Blelham Tarn, English Lake District

NEW PHYTOLOGIST, Issue 2 2002
P. A. Davis
Summary ,,Differences in photosynthetic production and conversion to biomass of the red-coloured cyanobacterium Planktothrix rubescens and the green-coloured Planktothrix agardhii , were investigated in relation to their growth in Blelham Tarn, UK, using clonal isolates from the lake. ,,Growth rates (µ) were measured in cultures under 12 h : 12 h light : dark cycles at 15 irradiances ( E ) in temperatures (,) of 10,25°C. Photosynthetic rates ( P ) were measured under the same conditions. ,,For P. rubescens , µ reached a maximum of 0.33 d ,1 at 25°C in photon irradiances > 40 µmol m ,2 s ,1 and exceeded µ for P. agardhii over the range of temperatures in Blelham Tarn (< 21°C), although not at temperatures > 25°C. In P. rubescens , the dif ference (,µ) between the growth rate of cell carbon (µ C ), calculated from P , and µ was only 3% at 10°C but increased with temperature to 30% at 25°C; in P. agardhii , ,µ values were higher at low temperatures and lower at the higher temperatures. ,,Using algorithms describing the irradiance- and temperature-dependent growth rates and measured values of E and , at different depths in Blelham Tarn, it was demonstrated that P. rubescens would outgrow P. agardhii , though the latter might grow better in warmer and shallower lakes. We discuss the problems of modelling phytoplankton growth from measurements of in situ photosynthesis. [source]

Large granular lymphocyte leukemia (LGL) in a child with hyper IgM syndrome and autoimmune hemolytic anemia

PEDIATRIC BLOOD & CANCER, Issue 1 2008
Brenda J. Kitchen MD
Abstract We describe a female with a history of autosomal recessive hyper-IgM (HIGM) syndrome along with a history of autoimmune hemolytic anemia and intermittent lymphadenopathy. She subsequently developed neutropenia, lymphocyostosis and mild thrombocytopenia. Flow cytometry of the peripheral blood revealed the presence of a marked predominance of cytotoxic T lymphocytes, shown to be clonal, with concomitant natural killer (NK) antigen expression. She responded to weekly methotrexate therapy. Pediatr Blood Cancer 2008;50:142,145. © 2006 Wiley-Liss, Inc. [source]

Geographic differences in paralytic shellfish poisoning toxin profiles among Japanese populations of Alexandrium tamarense and A. catenella (Dinophyceae)

PHYCOLOGICAL RESEARCH, Issue 1 2001
Takashi Yoshida
SUMMARY To reconsider whether toxin profile could be used as a marker for populations from different geographical areas, clonal isolates of the toxic dinoflagellates Alexandrium tamarense (Lebour) Balech and Alexandrium catenella (Whedon et Kofoid) Balech from Ofunato Bay (Iwate Prefecture), Atsumi Bay (Aichi Prefecture), Tanabe Bay (Wakayama Prefecture), Harima-Nada (Kagawa Prefecture), Uranouchi Bay (Kochi Prefecture), Hiroshima Bay (Hiroshima Prefecture) and Yamakawa Bay (Kagoshima Prefecture), which were identified on the basis of morphotaxonomy, immunological and molecular biological techniques, were subjected to analysis of paralytic shellfish poisoning toxins by high performance liquid chromatography-fluorometric method. All the isolates except A. tamarense OF152 from Ofunato Bay contained mainly N-sulfocarbamoyl toxins (C1 +2) with various amounts of derivatives, and a typical north-to-south trend of decreasing toxicity was observed. In both A. tamarense and A. catenella, toxin profiles were rather constant within a geographical area and divergent among different geographical areas. The toxin profiles of A. tamarense from Harima-Nada were well conserved among different bloom years. Toxin profile showed that isolates of A. tamarense from Ofunato Bay, A. tamarense from Harima-Nada isolated in 1988 and A. catenella from Uranouchi Bay were heterogeneous. However, only two or three groups of isolates with different toxin profiles were observed in a geographical region, suggesting that several representative isolates express the genotype in a given region. These observations confirmed that toxin composition could be used as a marker to discriminate different geographical populations of these species. [source]

Reproductive alternatives to insect pollination in four species of Thalictrum (Ranunculaceae)

PLANT SPECIES BIOLOGY, Issue 2 2004
JANET C. STEVEN
Abstract Although insect pollination is ancestral in the angiosperms, selection has favored wind pollination and self-fertilization in many lineages. The evolution of clonal growth may have also decreased dependence on insect pollinators. We investigate transitions away from insect pollination in the genus Thalictrum (Ranunculaceae) among four species that vary in pollination syndrome. Thalictrum sparsiflorum is insect pollinated and self-fertilization may also provide reproductive assurance. Thalictrum alpinum is clonal, has a floral morphology associated with wind pollination and is self-compatible. Thalictrum fendleri is a wind-pollinated and dioecious species that sets few fruits naturally and invests little in sexual reproduction, possibly due to a trade-off with clonal growth. Thalictrum dioicum is also wind-pollinated and dioecious, but does not grow clonally at our sites and has a higher investment in sexual reproduction than T. fendleri. The pollen : ovule ratio is largest in wind-pollinated species, but varies considerably among them, possibly reflecting differences in pollination efficiency and/or incidental insect pollination. None of the species appear pollen limited in the study populations, suggesting that factors other than pollen receipt limit female fertility at these sites. [source]