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Certain Organisms (certain + organism)
Selected AbstractsPlants intertwine fluvial landform dynamics with ecological succession and natural selection: a niche construction perspective for riparian systemsGLOBAL ECOLOGY, Issue 4 2009Dov Corenblit ABSTRACT Aim To contribute to the development of a macroevolutionary framework for riparian systems, reinforcing conceptual linkages between earth surface processes and biological and ecological processes. Location Riparian systems. Methods Literature review leading to an original proposition for perceiving the functioning of riparian systems in a new and different way. Results Riparian systems provide diverse landforms, habitats and resources for animals and plants. Certain organisms, defined as ,ecosystem engineers', significantly create and modify the physical components of riparian systems. Many studies have highlighted such engineering effects by animals on riparian systems, but the identification and understanding of the effects and responses of plants within fluvial corridors have emerged only recently. The modulation of matter, resources and energy flows by engineering plants helps establish characteristic sequences of fluvial landform creation and maintenance associated with synergetic ecological successions. We relate this process to the concept of niche construction, developed mainly by evolutionary biologists. Feedbacks between adaptive responses of riparian plants to flow regime and adjusting effects on biostabilization and bioconstruction are discussed in the context of niche construction at the scale of ecological succession and the evolution of organisms. Main conclusions Our conceptualization forges an integrated approach for understanding vegetated fluvial systems from a macroevolutionary perspective, for elucidating riparian ecosystem dynamics and potentially for establishing long-term stream conservation and restoration strategies. [source] The epigenetic calnexin-independent state is induced in response to environmental changesFEMS YEAST RESEARCH, Issue 8 2009Renée Guérin Abstract Yeasts have evolved numerous responsive pathways to survive in fluctuating and stressful environments. The endoplasmic reticulum (ER) is sensitive to adverse conditions, which are detected by response pathways to ensure correct protein folding. Calnexin is an ER transmembrane chaperone acting in both quality control of folding and response to persistent stress. Calnexin is a key protein required for viability in certain organisms such as mammals and the fission yeast Schizosaccharomyces pombe. Nevertheless, S. pombe calnexin-independent (Cin) cells were obtained after transient expression of a particular calnexin mutant. The Cin state is dominant, is stably propagated by an epigenetic mechanism and segregates in a non-Mendelian fashion to the meiotic progeny. The nucleolar protein Cif1p was identified as an inducer of the Cin state in a previous genetic screen. Here, we report the identification of novel inducers isolated in an overexpression genetic screen: pyruvate kinase (Pyk1p) and phosphoglycerate kinase (Pgk1p). Addition of pyruvate, the end product of pyruvate kinase and glycolysis, also induced calnexin independence in a dose-dependent manner. Remarkably, growth in respiration media or cold temperatures induced the appearance of Cin cells at high frequencies. Taken together, our results indicate that the Cin state can be triggered by extracellular changes, suggesting that this state represents an epigenetic adaptative response to environmental modifications. [source] Splitting of the fission yeast septumFEMS YEAST RESEARCH, Issue 6 2007Matthias Sipiczki Abstract In cell-walled organisms, a cross wall (septum) is produced during cytokinesis, which then splits in certain organisms to allow the daughter cells to separate. The formation and the subsequent cleavage of the septum require wall synthesis and wall degradation, which need to be strictly coordinated in order to prevent cell lysis. The dividing fission yeast (Schizosaccharomyces) cell produces a three-layered septum in which the middle layer and a narrow band of the adjacent cell wall can be degraded without threatening the integrity of the separating daughter cells. This spatially very precise process requires the activity of the Agn1p 1,3-,-glucanase and the Eng1p 1,3-,-glucanase, which are localized to the septum by a complex mechanism involving the formation of a septin ring and the directed activity of the exocyst system. The Sep1p-Ace2p transcription-factor cascade regulates the expression of many genes producing proteins for this complex process. Recent advances in research into the molecular mechanisms of separation and its regulation are discussed in this review. [source] Novel neuroprotective, neuritogenic and anti-amyloidogenic properties of 2,4-dinitrophenol: The gentle face of JanusIUBMB LIFE, Issue 4 2006Fernanda G. De Felice Abstract In Roman mythology, Janus was the god of gates, doors, beginnings and endings. He was usually depicted with two faces looking in opposite directions. Janus was frequently used to symbolize change and transitions, such as the progression from past to future or from one viewpoint to another. 2,4-dinitrophenol (DNP) and other nitrophenols have long been known to be toxic at high concentrations (the 'bad' face of DNP), an effect that appears essentially related to interference with cellular energy metabolism due to uncoupling of mitochondrial oxidative phosphorylation. Five years ago, however, we published the first report showing that low concentrations of DNP protect neurons against the toxicity of the amyloid-, peptide (De Felice et al. (2001) FASEB J. 15:1297 - 1299]. Since then, other studies have provided evidence of beneficial actions of DNP (at low concentrations), including neuroprotection against different types of insult, blockade of amyloid aggregation, stimulation of neurite outgrowth and neuronal differentiation, and even extension of lifespan in certain organisms. Some of these effects appear to be due to mild mitochondrial uncoupling and prevention of cellular oxidative stress, whereas other actions are related to activation of additional intracellular signaling pathways. Thus, a novel and 'gentle' face of DNP is emerging from such studies. In this review, we discuss both toxic and beneficial actions of DNP. The evidence available so far suggests that DNP and other compounds with similar biological activities may be of significant interest to the development of novel therapeutic approaches for neurodegenerative diseases and other neurological disorders. iubmb Life, 58: 185-191, 2006 [source] Temperature Effects on Survival and DNA Repair in Four Freshwater Cladoceran Daphnia Species Exposed to UV RadiationPHOTOCHEMISTRY & PHOTOBIOLOGY, Issue 1 2009Sandra J. Connelly The biological responses of four freshwater daphniid species, Daphnia middendorffiana, D. pulicaria, D. pulex and D. parvula, to a single acute dose of ultraviolet B radiation (UVB) were compared. In addition to survival, we compared the induction of DNA damage (i.e. cyclobutane pyrimidine dimers) between species as well as the ability to repair this damage in the presence or absence of photoreactivating light. All four species showed high levels of shielding against DNA damage when compared to damage induced in purified DNA dosimeters at the same time and dose. Significant variation in survival was observed between species depending on temperature and light conditions. Contrary to our expectations, all species showed significantly higher survival and light-dependent DNA damage removal rates at 10°C compared to 20°C, suggesting that the enhanced rate of photoenzymatic repair (PER) at the lower temperature contributed significantly to the recovery of these organisms from UVB. PER was highly effective in promoting survival of three of the four species at 10°C, but at 20°C it was only partially effective in two species, and ineffective in two others. None of the species showed significant dark repair at 20°C and only D. pulicaria showed a significant capacity at 10°C. Two species, D. middendorffiana and D. pulex, showed some short-term survival at 10°C in absence of PER despite their inability to repair any appreciable amount of DNA damage in the dark. All species died rapidly at 20°C in absence of PER, as predicted from complete or near-absence of nucleotide excision repair (NER). Overall, the protective effects of tissue structure and pigmentation were similar in all Daphnia species tested and greatly mitigated the absorption of UVB by DNA and its damaging effects. Surprisingly, the visibly melanotic D. middendorffiana was not better shielded from DNA damage than the three non-melanotic species, and in fact suffered the highest damage rates. Melanin content in this species was not temperature dependent under the experimental growth conditions, and so did not contribute to temperature-dependent responses. It is evident that different species within the same genus have developed diverse biological responses to UVB. Our data strongly suggest that DNA damage is lethal to Daphnia and that photoenzymatic repair is the primary mechanism for removing these lesions. In the absence of light, few species are capable of removing any DNA damage. Surprisingly, the single species in which significant excision repair was detected did so only at reduced temperature. This temperature-dependence of excision repair is striking and may reflect adaptations of certain organisms to stress in a complex and changing environment. [source] | ||||||||||