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Biotic Factors (biotic + factor)
Selected AbstractsReestablishment of the Southern California Rocky Intertidal Brown Alga, Silvetia compressa: An Experimental Investigation of Techniques and Abiotic and Biotic Factors That Affect Restoration SuccessRESTORATION ECOLOGY, Issue 2010Stephen G. Whitaker Previous research has indicated that many rocky intertidal macrophyte communities in southern California, and other locations around the world, have shifted from larger, highly productive, fleshy seaweeds toward a smaller, less productive, disturbance-tolerant flora. In widespread decline are ecologically important, canopy-forming, brown seaweeds, such as the southern California rockweed species Silvetia compressa. Restoration efforts are common for depleted biogenic species in other habitats, but restoration within rocky intertidal zones, particularly on wave-exposed coasts, has been largely unexplored. In two phases, we attempted to restore Silvetia populations on a southern California shore by transplanting live plants and experimentally investigating factors that affect their survival. In Phase I, we implemented a three-way factorial design where juvenile Silvetia thalli were transplanted at four sites with a combination of simulated canopy and herbivore exclusion treatments. Transplant survival was low, although enhanced by the presence of a canopy; site and herbivore presence did not affect survival. In Phase II, we used a two-way factorial design, transplanting two size classes of rockweeds (juveniles and reproductive adults) on horizontal and partially shaded, north-facing vertical surfaces at a target location where this rockweed has been missing since at least the 1970s. Transplant survival was moderate but lower than natural survival rates. Larger thalli exhibited significantly higher survival rates than smaller thalli in both the transplanted and naturally occurring populations, particularly on vertical surfaces. Higher mortality on horizontal surfaces may have been due to differences in desiccation stress and human trampling. Transplanting reproductive adults resulted in the subsequent recruitment of new individuals. [source] BACTERIA-INDUCED MOTILITY REDUCTION IN LINGULODINIUM POLYEDRUM (DINOPHYCEAE),JOURNAL OF PHYCOLOGY, Issue 4 2008Xavier Mayali Biotic factors that affect phytoplankton physiology and behavior are not well characterized but probably play a crucial role in regulating their population dynamics in nature. We document evidence that some marine bacteria can decrease the swimming speed of motile phytoplankton through the release of putative protease(s). Using the dinoflagellate Lingulodinium polyedrum (F. Stein) J. D. Dodge as a model system, we showed that the motility-reducing components of bacterial-algal cocultures were mostly heat labile, were of high molecular weight (>50 kDa), and could be partially neutralized by incubations with protease inhibitors. We further showed that additions of the purified protease pronase E decreased dinoflagellate swimming speed in a concentration-dependent manner. We propose that motility can be used as a marker for dinoflagellate stress or general unhealthy status due to proteolytic bacteria, among other factors. [source] Survival of enteric bacteria in seawaterFEMS MICROBIOLOGY REVIEWS, Issue 5 2001Yael Rozen Abstract Enteric bacteria exposed to the marine environment simultaneously encounter a variety of abiotic and biotic challenges. Among the former, light appears to be critical in affecting seawater survival; previous growth history plays a major part in preadaptation of the cells, and stationary phase cells are generally more resistant than exponentially growing ones. Predation, mostly by protozoa, is probably the most significant biotic factor. Using Escherichia coli as a model, a surprisingly small number of genes was found that, when mutated, significantly affect seawater sensitivity of this bacterium. Most prominent among those is rpoS, which was also dominant among genes induced upon transfer to seawater. [source] Effects of bryophytes and lichens on seedling emergence of alvar plants: evidence from greenhouse experimentsOIKOS, Issue 3 2000Manuela Zamfir Emergence of seedlings of four alvar grassland species (Arenaria serpyllifolia, Festuca ovina, Filipendula vulgaris and Veronica spicata) in bryophyte and lichen carpets was analysed in a series of greenhouse experiments. The aspects investigated were: the influence of thickness of moss mats, both in dry and moist conditions, the effects of thick Cladonia spp. clumps, and of living vs dead moss shoots and lichen podetia. Overall, Festuca seedlings emerged best whereas the small-seeded species, Arenaria and Veronica , had the lowest emergence. Moisture had a significant effect only on the emergence of Festuca seedlings, which emerged better in the dry treatment than in the moist. A thick moss cover negatively affected seedling emergence of Arenaria and Veronica but did not affect the emergence of Festuca. Filipendula showed lower seedling emergence in both thick and thin moss than on bare soil only in the dry treatment, whereas in the moist treatment emergence did not differ among the three substrates. Arenaria seedlings emerged less in thick and thin moss than on bare soil in the dry treatment, whereas in the moist treatment emergence in the thin moss was not different from bare soil. Thus, in relatively dry environments even a thin moss cover may inhibit rather than facilitate seedling emergence. The lichen clumps inhibited only the emergence of the forbs. Both living moss shoots and lichen podetia inhibited emergence of Veronica seedlings but did not affect Festuca. In contrast, emergence in the presence of dead mosses and lichens did not differ from emergence in their absence for both species. Hence, inhibition of seedling emergence by bryophytes and lichens of at least some vascular plant species may be mediated by some biotic factor. However, the effect of differences in substrate properties on germination cannot be excluded [source] The fundamental and realized niche of the Monterey Pine aphid, Essigella californica (Essig) (Hemiptera: Aphididae): implications for managing softwood plantations in AustraliaDIVERSITY AND DISTRIBUTIONS, Issue 4 2004Trudi N. Wharton ABSTRACT Essigella californica is a pine aphid native to western North America. In Australia, E. californica is considered an invasive pest that has the potential to cause severe economic loss to the Australian forestry industry. Two CLIMEX models were developed to predict the Australian and global distribution of E. californica under current climate conditions based upon the aphid's known North American distribution. The first model (model I) was fitted using the reasonably contiguous set of location records in North America that constituted the known range of E. californica, and excluded consideration of a single (reliable) location record of the aphid in southern Florida. The second model (model II) was fitted using all known records in North America. Model I indicated that the aphid would be climatically restricted to the temperate, Mediterranean and subtropical climatic regions of Australia. In northern Australia it would be limited by hot, wet conditions, while in more central areas of Australia it is limited by hot, dry conditions. Model II is more consistent with the current Australian distribution of E. californica. The contrast in geographical range and climatic conditions encompassed between the two models appears to represent the difference between the realized niche (model I) and fundamental niche (model II) of E. californica. The difference may represent the strength of biotic factors such as host limitation, competition and parasitism in limiting geographical spread in the native range. This paper provides a risk map for E. californica colonization in Australia and globally. E. californica is likely to remain a feature of the Australian pine plantations, and any feasibility studies into establishing coniferous plantations in lower rainfall areas should consider the likely impact of E. californica. [source] Climatic stress, food availability and human activity as determinants of endemism patterns in the Mediterranean region: the case of dung beetles (Coleoptera, Scarabaeoidea) in the Iberian PeninsulaDIVERSITY AND DISTRIBUTIONS, Issue 5 2002José R. Verdú Abstract. A study to assess the influence of abiotic (climatic conditions) and biotic factors (food resources, habitat preference and human activity) on endemism patterns of dung beetles in the Mediterranean region was conducted in the Iberian Peninsula and the Balearic Islands. The Thermicity Index (It), the Mediterraneity Index (Im3) and the Aridity Index (Ia) were used to assess the influence of abiotic factors. Relative rabbit density (DR), the proportion of landscape used historically for grazing by sheep and goats and the nature of the food resource were used to assess the influence of biotic factors. Relative endemism (EN) of dung beetle assemblages was positively and significantly related with all of the factors considered. However, the Aridity and Mediterraneity Indices are the best predictors of EN. The predicted endemism (EN = 0.017 Ia + 0.004 Im3 + 0.422) was highly positively and significantly related with the observed endemism. Dung beetle assemblages with the highest relative endemism were observed in the south-eastern part of the Iberian Peninsula. This distribution corresponded to the highest Aridity and Mediterraneity. In contrast, dung beetle assemblages with lower endemism were located in more humid and temperate areas. Assemblages of dung beetles with the highest endemism comprise many species adapted to aridity and the exploitation of dry dung pellets. Conservation of traditional grazing activity by pellet-dropping sheep and goats might benefit the maintenance of dung beetle biodiversity in Mediterranean ecosystems. [source] Distribution, abundance, and individual strategies: a multi-scale analysis of dasyurid marsupials in arid central AustraliaECOGRAPHY, Issue 3 2006Adele S. Haythornthwaite We investigated the effects of different environmental factors on the distribution and abundance of 6 species of dasyurid marsupials using a multiple-scale analysis. Data collected in the spinifex dunefields of the Simpson Desert, Australia, were analysed at 3 spatial scales spanning more than 5 orders of magnitude: "metasite" (covering an area of 1000,2000 km2), site (2,12 km2) and grid (0.01 km2). Temporal variability was also investigated, using data collected in March, April, and May in 4 consecutive years from 1997 to 2000. Both abiotic and biotic factors influenced the capture rates of different species at different times and spatial scales. At the coarsest spatial scale, Dasycercus cristicauda (mulgara) was consistently limited in its distribution by the intensity of rainfall, probably as an indirect result of increased grazing pressure from pastoral activity and a higher density of feral predators in high rainfall areas. However, at the finest spatial scale, this partly carnivorous species was scarce in areas of dense spinifex, perhaps because such habitats yield lowest returns during foraging, and was more common in areas where small invertebrate prey were abundant. Factors affecting the distribution of the most abundant dasyurid species in the study area, Sminthopsis youngsoni (lesser hairy-footed dunnart), could not be identified at any scale; we conclude that this reflects the opportunistic foraging strategies and flexible habitat requirements of this insectivorous species. Both Ningaui ridei (wongai ningaui) and Sminthopsis hirtipes (hairy-footed dunnart) were less abundant throughout the study region. For N. ridei, a spinifex specialist, predictors of occurrence could be identified only at the finest scale of analysis; at the grid level, a close positive association was detected in 2 of the 4 study years between capture rate and spinifex cover. For S. hirtipes, all 3 levels of spatial analysis revealed a negative association between capture rate and both rainfall and spinifex density. For the rarely-caught S. crassicaudata (fat-tailed dunnart) and Planigale tenuirostris (narrow-nosed planigale), no clear results were obtained at any spatial scale, and we interpret this to indicate that the study region represents sub-optimal habitat for these species. Given that different factors affected the distribution and abundance of dasyurids at different spatial scales over time, we conclude that a multiple-scale approach to population and community analysis is vital to accurately identify which environmental processes shape population and community dynamics. Understanding the interplay between regional and local processes will be crucial for management of existing species populations and for prediction of their distributions and abundances in future. [source] Cholinesterase and glutathione- S -transferase activities in freshwater invertebrates as biomarkers to assess pesticide contaminationENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 1 2010Inês Domingues Abstract Studies investigating the use of biomarkers in pesticide risk assessment have greatly increased in recent years; however, issues concerning the ecological meaning of enzymatic responses have proved controversial. Ideally a good biomarker response should be modulated by the environmental contaminants alone and demonstrate a predictable behavior towards certain types of toxins. As these premises are rarely observed, the present study aims to outline research that has contributed to an understanding of the behavior of two widely used biomarkers, cholinesterase and glutathione- S -transferase, describing environmental and biotic factors that affect their response in freshwater invertebrates. Studies were performed in the main classes of aquatic invertebrates with these biomarkers and conclusions were reached concerning their behavior towards the main classes of pesticides. Links between biomarker responses and conventional endpoints were evaluated so that ecological relevance could be attributed to enzymatic responses. Toxicity of mixtures was investigated, and cases of synergism and antagonism were pointed out as factors changing the expected toxicity of aquatic systems and leading to misinterpretations of biomarker responses. Finally, the use of biomarkers as a tool for biomonitoring and in situ assays was investigated, with discussion of advantages and disadvantages of their use. Environ. Toxicol. Chem. 2010;29:5,18. © 2009 SETAC [source] Influence of isolation on the recovery of pond mesocosms from the application of an insecticide.ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 6 2007Abstract The influence of relative isolation on the ecological recovery of freshwater outdoor mesocosm communities after an acute toxic stress was assessed in a 14-month-long study. A single concentration of deltamethrin was applied to 8 out of 16 outdoor 9-m3 mesocosms to create a rapid decrease of the abundance of arthropods. To discriminate between external and internal recovery mechanisms, four treated and four untreated (control) mesocosms were covered with 1-mm mesh screen lids. The dynamics of planktonic communities were monitored in the four types of ponds. The abundance of many phytoplankton taxa increased after deltamethrin addition, but the magnitude of most increases was relatively small, probably due to low nutrient availability and the survival of rotifers. The greatest impact on zooplankton was seen in Daphniidae and, to a lesser extent, calanoid copepods. Recovery (defined as when statistical analysis failed to detect a difference in the abundance between the deltamethrin-treated ponds and corresponding control ponds for two consecutive sampling dates) of Daphniidae was observed in the water column 105 and 77 d after deltamethrin addition in open and covered mesocosms, respectively, and <42 d for both open and covered ponds at the surface of the sediments. Rotifers did not proliferate, probably because of the survival of predators (e.g., cyclopoid copepods). These results confirm that the recovery of planktonic communities after exposure to a strong temporary chemical stress mostly depends upon internal mechanisms (except for larvae of the insect Chaoborus sp.) and that recovery dynamics are controlled by biotic factors, such as the presence of dormant forms and selective survival of predators. [source] The influence of arbuscular mycorrhizal colonization and environment on root development in soilEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 4 2003D. Atkinson Summary The production of fine roots is one of the principal means by which carbon, fixed during photosynthesis, enters the soil, and quantifying the production for particular combinations of environmental and biotic factors is important for predicting the sequestration of carbon in the soils of grassland ecosystems. Arbuscular mycorrhizal fungi (AMF) can have a major effect on the production of roots, and we studied how colonization by AMF affects the lifespan of roots. Twenty per cent of control roots of Trifolium repens survived for longer than 42 days whereas 37% survived that long in AMF-colonized plants. The overall survival of the roots of Lolium perenne was less than in T. repens: around 10% of roots survived beyond 42 days and this was not affected by AMF colonization. Previous studies have shown that lifespans of roots can be affected by temperature. We tested the hypothesis that these observations are linked to a change in the morphology of the root system caused by temperature and also by AMF. We found that inoculation with AMF in a microcosm study using Plantago lanceolata grown at various temperatures, with and without AMF, showed no clear effect of AMF on branching patterns. Temperature had a significant effect on total lengths, numbers and branching rates of some higher orders of roots. Total lengths of both secondary and tertiary roots grown at 27°C were about double those of plants grown at 15°C. Colonization by AMF tended to reduce this effect. Evidently the effect of colonization by AMF on root lifespan depends on the species. Increased branching, and thus a greater proportion of ephemeral roots, was responsible for shortening the lives of the roots at increased temperature, which suggests a strong link between lifespan and morphology. [source] Inability of Escherichia coli to resuscitate from the viable but nonculturable stateFEMS MICROBIOLOGY ECOLOGY, Issue 1 2007Inés Arana Abstract After induction of the viable but nonculturable (VBNC) state in Escherichia coli populations, we analysed abiotic and biotic factors suggested to promote the resuscitation process. The response to the stressing conditions implied the formation of three subpopulations, culturable, VBNC and nonviable. In most adverse situations studied, the VBNC subpopulation did not represent the dominant fraction, decreasing with time. This suggests that, in most cases, the VBNC is not a successful phenotype. Combining methods of dilution and inhibition of remaining culturable cells, we designed a working protocol in order to distinguish unequivocally between regrowth and resuscitation. Reversion of abiotic factors inducing nonculturability as well as prevention of additional oxidative stress did not provoke resuscitation. Participation of biotic factors was studied by addition of supernatants from different origin without positive results. These results indicate that the E. coli strain used is not able to resuscitate from the VBNC state. VBNC cells release into the surrounding medium, and could thus aid in the survival of persisting culturable cells. The formation of a VBNC subpopulation could thus be considered as an adaptive process, designed for the benefit of the population as a whole. [source] Spatial patterns and environmental factors affecting the presence of Melampsorella caryophyllacearum infections in an Abies alba forest in NE SpainFOREST PATHOLOGY, Issue 3 2006A. Solla Summary The presence of trunk swellings caused by the rust fungus Melampsorella caryophyllacearum was systematically surveyed in an Abies alba forest (Irati, NE Spain), using 1237 circular plots (diameter = 18 m). The relationship between fungal presence and several abiotic (aspect, elevation, distance to the nearest river and slope) and biotic factors (basal area of A. alba and/or Fagus sylvatica, shrub, fern and herb cover) was assessed through correlation and ordination analyses. Additionally, the spatial pattern of the presence of diseased trees was described using Ripley's K function. Southern-aspect plots had a significantly lower presence of diseased trees than plots-oriented north, east and west. Plots with diseased trees were located at a significantly lower elevation, and at a shorter distance to the river than plots without infections. Plots with diseased trees had almost twice the average A. alba basal area, and less average F. sylvatica basal area than plots without diseased trees. However, similar mean values of slope and shrub, fern and herb cover were found in both types of plots. The disease showed spatial aggregation in patches with a mean radius of ca. 900 m. The implications of the results for disease management are discussed. Résumé La présence de renflements sur les troncs causés par l'agent de la rouille, Melampsorella caryophyllacearum, a étéétudiée de façon systématique dans une forêt d'Abies alba (Irati, NE Espagne), en utilizant 1237 placettes circulaires (diamètre de 18 m). Les relations entre la présence du champignon et divers facteurs abiotiques (orientation, altitude, distance à la rivière la plus proche, pente) et biotiques ( surface terrière de A. alba et/ou Fagus sylvatica, abondance de la couverture herbacée et abondance d'arbustes et fougères) ont étéétudiées par analyses de corrélation et d'ordination. D'autre part, la structure spatiale de la présence d'arbres infectés a été décrite en utilizant la fonction K de Ripley. Les placettes exposées au sud présentent moins fréquemment des arbres malades que celles exposées au nord, à l'est ou à l'ouest. Les placettes avec des arbres malades sont situées à une altitude significativement plus faible et à une distance plus faible d'une rivière que les placettes sans infections, et elles présentent une surface terrière 2 fois plus forte en moyenne pour A. alba, et plus faible pour F. sylvatica, que les placettes non-infectées. Toutefois, des valeurs moyennes équivalentes pour la pente, la couverture herbacée et l'abondance d'arbustes et fougères, sont observées pour les deux types de placettes. La maladie montre une agrégation spatiale en foyers d'un rayon moyen de 900 m. Les résultats sont discutés dans une perspective de gestion de la maladie. Zusammenfassung Das Vorkommen von durch den Rostpilz Melampsorella caryophyllacearum verursachten Stammdeformationen wurde in einem Abies alba - Wald (Irati, NO-Spanien) auf 1237 kreisförmigen Probeflächen (Durchmesser 18 m) systematisch erfasst. Die Beziehung zwischen dem Pilzvorkommen und mehreren abiotischen (Exposition, Meereshöhe, Distanz zum nächsten Fluss, Hangneigung) und biotischen Faktoren (Deckungsgrad von A. alba und/oder Fagus sylvatica, Strauch-, Farn- und Krautschicht) wurden durch Korrelations- und Ordinations-Analysen überprüft. Zudem wurden räumliche Muster der befallenen Bäume mit Hilfe von Ripley's K-Funktion beschrieben. In südexponierten Probeflächen kamen signifikant weniger erkrankte Bäume vor als in nach Norden, Osten und Westen orientierten Standorten. Flächen mit Befall lagen in signifikant geringerer Meereshöhe und kürzerer Distanz zum nächsten Fluss als solche ohne Befall. Zudem hatten sie beinahe die doppelte Basalfläche mit A. alba und eine durchschnittliche geringere Basalfläche mit F. sylvatica. Die durchschnittlichen Werte für die Strauch-, Farn- und Krautschicht sowie die Hangneigung unterschieden sich jedoch nicht in den Flächen mit und ohne Befall. Erkrankte Bäume waren räumlich aggregiert mit einem mittleren Radius von ca. 900 m. Die Bedeutung dieser Befunde für das Krankheitsmanagement wird diskutiert. [source] Hyperparasitic Stagonospora sp. on Botryosphaeria stevensiiFOREST PATHOLOGY, Issue 6 2003L. Vajna Summary An unknown fungus, Stagonospora sp., has been found on and in stromata of Botryosphaeria stevensii Shoemaker anamorph (Diplodia mutila Fr. & Mont.) and Diatrypella quercina (Persoon) Nitschke. Microscopic investigations indicated that the fungus might be a hyperparasite of some ascomycetous fungi, necrotrophs or weak parasites on sessile oak [Quercus petraea] and turkey oak (Quercus cerris). Dual culture studies carried out with monoconidial isolates of Stagonospora sp. and B. stevensii have demonstrated that Stagonospora sp. is a necrotrophic mycoparasite which might suppress, to some extent, the natural population of B. stevensii. Botryosphaeria stevensii is one of the biotic factors causing oak decline. Morphology of the fungus and symptoms of mycoparasitic interaction are described. Stagonospora sp. found in Hungary is assumed to be identical with hyperparasitic Stagonospora sp. reported from Germany and Austria as parasite of Ascodichaena rugosa and Ascodichaena mexicana in Mexico. This is the first record of hyperparasitic Stagonospora sp. of B. stevensii and D. quercina. Résumé Un champignon inconnu, Stagonospora sp, a été trouvé sur et dans les stromas de Botryosphaeria stevensii Shoemaker (anamorphe Diplodia mutila Fr. & Mont.) et Diatrypella quercina (Persoon) Nitschke. D'après les études microscopiques, le champignon pourrait être un hyperparasite de champignons ascomycètes, nécrotrophes ou parasites de faiblesse du chêne sessile [Q. petraea] et du chêne chevelu (Quercus cerris L.). Des confrontations en culture d'isolats monoconidiens de Stagonospora sp. et Botryosphaeria stevensii montrent que Stagonospora sp. est un mycoparasite nécrotrophe qui pourrait limiter dans une certaine mesure les populations naturelles de Botryosphaeria stevensii. Botryosphaeria stevensii est un des facteurs biotiques associés au dépérissement des chênes. La morphologie du champignon et les symptômes de l'interaction mycoparasitaire sont décrits. L'espèce de Stagonospora trouvée en Hongrie est supposée identique au Stagonospora décrit en Allemagne et Autriche comme parasite de Ascodichaena rugosa et au Mexique sur Ascodichaena mexicana. Cette étude constitue la première mention de Stagonospora sp. hyperparasite de B. stevensii et D. quercina. Zusammenfassung Eine bisher unbekannte Art von Stagonospora wurde in und auf Stromata von Diatrypella quercina (Persoon) Nitschke sowie der Anamorphe (Diplodia mutila Fr. & Mont.) von Botryosphaeria stevensii Shoemaker nachgewiesen. Mikroskopische Beobachtungen legen eine hyperparasitische Lebensweise auf zu den Ascomyceten gehörenden, nekrotrophen Parasiten und Schwächeparasiten von Trauben- (Q. petraea) und Zerreiche (Quercus cerris) nahe. Dualkulturen von Monokonidien-Isolaten von Stagonospora sp. und B. stevensii zeigten, dass es sich bei der Stagonospora -Art um einen nekrotrophen Mycoparasiten handelt, der möglicherweise unter gewissen Umständen die Entwicklung natürlicher Populationen von B. stevensii zu hemmen vermag. B. stevensii ist einer der biotischen Faktoren des ,,Eichensterbens". Die in Ungarn nachgewiesene Art dürfte mit derjenigen Stagonospora -Art identisch sein, welche Ascodichaena rugosa in Deutschland und Österreich sowie Ascodichaena mexicana in Mexico parasitiert. Bei der vorliegenden Arbeit handelt es sich um den ersten Nachweis einer hyperparasitischen Stagonospora -Art auf B. stevensii und D. quercina. [source] The influence of stream invertebrate composition at neighbouring sites on local assemblage compositionFRESHWATER BIOLOGY, Issue 2 2005R. A. SANDERSON Summary 1. The composition of freshwater invertebrate assemblages at a location is determined by a range of physico-chemical and biotic factors in the local environment, as well as larger-scale spatial factors such as sources of recruits. We assessed the relative importance of the species composition of local neighbourhoods and proximal environmental factors on the composition of invertebrate assemblages. 2. Macroinvertebrate assemblages were sampled at 188 running-water sites in the catchment of the River Rede, north-east England. A total of 176 species were recorded. 3. Environmental data, in the form of 13 biotic and abiotic measurements that described stream physical structure, aquatic vegetation and water characteristics, were recorded for each site. Detrended correspondence analysis was then used to simplify nine of these stream environmental variables to create an index of stream structure. 4. The species composition of the invertebrate assemblages was related to the environmental variables, using an information theoretic approach. The impact of the species composition of neighbouring sites on each site was determined using Moran's I and autoregressive modelling techniques. 5. Species composition was primarily associated with water pH and stream structure. The importance of the species composition of neighbouring sites in determining local species assemblages differed markedly between taxa. The autoregressive component was low for Coleoptera, intermediate for Trichoptera and Plecoptera, and high for Ephemeroptera. 6. We hypothesise that the observed differences in the autoregressive component amongst these orders reflects variation in their dispersal abilities from neighbouring sites. [source] Climatic effects on the phenology of lake processesGLOBAL CHANGE BIOLOGY, Issue 11 2004Monika Winder Abstract Populations living in seasonal environments are exposed to systematic changes in physical conditions that restrict the growth and reproduction of many species to only a short time window of the annual cycle. Several studies have shown that climate changes over the latter part of the 20th century affected the phenology and population dynamics of single species. However, the key limitation to forecasting the effects of changing climate on ecosystems lies in understanding how it will affect interactions among species. We investigated the effects of climatic and biotic drivers on physical and biological lake processes, using a historical dataset of 40 years from Lake Washington, USA, and dynamic time-series models to explain changes in the phenological patterns among physical and biological components of pelagic ecosystems. Long-term climate warming and variability because of large-scale climatic patterns like Pacific decadal oscillation (PDO) and El Niño,southern oscillation (ENSO) extended the duration of the stratification period by 25 days over the last 40 years. This change was due mainly to earlier spring stratification (16 days) and less to later stratification termination in fall (9 days). The phytoplankton spring bloom advanced roughly in parallel to stratification onset and in 2002 it occurred about 19 days earlier than it did in 1962, indicating the tight connection of spring phytoplankton growth to turbulent conditions. In contrast, the timing of the clear-water phase showed high variability and was mainly driven by biotic factors. Among the zooplankton species, the timing of spring peaks in the rotifer Keratella advanced strongly, whereas Leptodiaptomus and Daphnia showed slight or no changes. These changes have generated a growing time lag between the spring phytoplankton peak and zooplankton peak, which can be especially critical for the cladoceran Daphnia. Water temperature, PDO, and food availability affected the timing of the spring peak in zooplankton. Overall, the impact of PDO on the phenological processes were stronger compared with ENSO. Our results highlight that climate affects physical and biological processes differently, which can interrupt energy flow among trophic levels, making ecosystem responses to climate change difficult to forecast. [source] Development of an ex vivo model for the study of microbial infection in human teethINTERNATIONAL ENDODONTIC JOURNAL, Issue 5 2007B. Patel Aims, (1) To infect human teeth artificially to mimic root canal and dentine infection, using the Constant Depth Film Fermenter (CDFF); (2) To verify the similarity of the infections to those found, in vivo, using culture and microscopy (SEM, LM and TEM). Methodology, Human teeth [n = 38 and n = 28, for phases I (preliminary) and II (definitive), respectively] were infected within the CDFF for a period of 28 days and at pre-selected time points were removed, externally decontaminated using validated protocols and subjected to either culture-dependent or microscopy protocols. The condition of the teeth was varied in phase I to establish the feasibility of the approach and identify optimal conditions. This informed the selection of optimal conditions for definitive test in phase II. For culture-dependent analysis in this phase, a dentine filing sample was obtained from the apical 5 mm of the root canal and cultured anaerobically to allow isolation of individual strains. Bacterial DNA was extracted from purified isolates, the 16S rRNA genes amplified by PCR and the amplicons sequenced for identity using sequence databases. Teeth assigned for microscopy were post-fixed in 3% gluteraldehyde after removal from the CDFF and then subjected to appropriate protocols prior to microscopic evaluation of the infection. Results, All three microscopy techniques and culture-dependent analysis confirmed infection of the human teeth using the CDFF, with root canal infections visually resembling closely those seen in vivo. Furthermore, partial 16S rRNA gene sequencing of DNA from cultured isolates confirmed a selective number of 7,9 genera/species in the apical portion of two teeth each at 7 and 28 days; these taxa are also commonly recovered from teeth with apical periodontitis, in vivo. There were no objective measures other than speciation and topographical evaluation to compare the artificial and real (in vivo) infections. Conclusions, The proposed ex vivo model has the potential for development into an investigative tool for studying the dynamics of bacterial ecology in infected root canals, both before and after treatment. Its advantage is the ability to control both the abiotic and biotic factors. There is a need for the development of objective measures to compare artificial and real bacterial biofilms. [source] Interacting effects of management and environmental variability at multiple scales on invasive species distributionsJOURNAL OF APPLIED ECOLOGY, Issue 6 2009Jeffrey M. Diez Summary 1. The distribution and abundance of invasive species can be driven by both environmental variables and land management decisions. However, understanding these relationships can be complicated by interactions between management actions and environmental variability, and differences in scale among these variables. The resulting ,context-dependence' of management actions may be well-appreciated by ecologists and land managers, but can frustrate attempts to apply general management principles. 2. In this study, we quantify the effects of land management and environmental variability at different scales on the occurrence and abundance of Hieracium pilosella, a major agricultural weed in New Zealand. We used a hierarchical study design and analysis to capture relevant scales of variation in management actions and environmental heterogeneity, and test hypotheses about how these factors interact. 3. We show that fertilizing and grazing interact with environmental gradients at the scale of management application (farm paddocks) to influence the establishment and local abundance of H. pilosella. 4. We further show that H. pilosella's relationships with fine-scale abiotic and biotic factors are consistent with expected mechanisms driven by larger-scale management actions. Using data on occurrence and local abundance, we tease apart which factors are important to establishment and subsequent local spread. 5.Synthesis and applications. A major challenge for environmental scientists is to predict how invasive species may respond to ongoing landscape modifications and environmental change. This effort will require approaches to study design and analysis that can accommodate complexities such as interacting management and environmental variables at different scales. Management actions will be more likely to succeed when they explicitly account for variation in environmental context. [source] Modelling ecological half-lives for radiocaesium in Norwegian brown trout populationsJOURNAL OF APPLIED ECOLOGY, Issue 1 2000Dag O. Hessen Summary 1.,Models of ecological half-life may be valuable and cost-effective predictive tools for authorities setting restrictions on human consumption of freshwater fish after environmental releases of radioactivity. This work aimed to validate such a model for radioactive caesium (134Cs and 137Cs) in brown trout Salmo trutta populations. Data were drawn from lakes with a wide variability in abiotic and biotic factors and initial caesium load. 2.,In Norway, the highest fallout (more than 150 kBq m,2 of 137Cs) from the Chernobyl accident occurred in Oppland county, in south central Norway. Radioactivity was measured in more than 1800 samples of brown trout in nearly 100 localities in this region during 1986,95. 3.,The back-calculated maximum initial radioactivity on 1 January 1987 showed a strong regional variability (range 443,13 370; average 3855 Bq kg,1). Large variation in initial radioactivity was also recorded on a local scale (within 50 km). 4.,The ecological half-life model for caesium in brown trout populations for 1987,94/95 gave a close fit to real data from all localities with sufficient time series. Predicted half-lives ranged from 1·2 to 4·2 years (average 2·5) but 95% confidence limits were narrow (2·7 and 2·3 years). 5.,The overall variability in radioactivity levels over time was almost entirely related to the initial load and, with few exceptions, 88% of the changes in radioactivity was explained by the simple regression model. Modest variability in ecological half-life was not correlated with initial activity, and no clear effects of water quality or season could be detected. For most lakes, levels of radioactivity in brown trout appeared to be predictable, with high accuracy after a fallout event, without extensive information on population ecology and water quality. However, more detailed work may be required to assess patterns within individual lakes. [source] ORIGINAL ARTICLE: The biogeography of avian extinctions on oceanic islandsJOURNAL OF BIOGEOGRAPHY, Issue 6 2008Tim J. Karels Abstract Aim, To test the influences of island area, island isolation, and human-introduced mammalian predators on avian extinctions that have occurred on oceanic islands worldwide. Location, The oceanic islands of the world. Methods, We augmented and re-examined an existing data set for 218 oceanic islands by means of causal modelling using path analysis (a form of structural equation modelling) and a null model. Results, The number of extinctions was not a simple function of the number of bird species on the various islands. Whereas introduced mammalian predators had an influence on the number of extinctions, island area (via indirect influences) and isolation (via direct influences) were equally or more important. Main conclusions, The multiple influences of physical and biotic factors on past extinctions can be revealed through modelling the causal influences of physical attributes of islands on biological characteristics, and the causal influences of both physical and biological characteristics on extinctions. [source] Factors affecting abundance and distribution of submerged and floating macrophytes in Lake Naivasha, KenyaAFRICAN JOURNAL OF ECOLOGY, Issue 1 2009A. N. Ngari Abstract Macrophytes have been shown to perform important ecological roles in Lake Naivasha. Consequently, various studies regarding the impact of biotic factors on the macrophytes have been advanced but related studies on environmental parameters have lagged behind. In an attempt to address this gap, sampling on floating species and submergents was carried out in eight sampling sites in 2003 to investigate how they were influenced by a set of environmental factors. Soil texture (sandy sediments; P < 0.05, regression coefficient = ,0.749) and wind were the most important environmental parameters influencing the distribution and abundance of floating macrophytes. Combination of soil texture and lake-bed slope explained the most (86.3%) variation encountered in the submergents. Continuous translocation of the floating dominant water hyacinth to the western parts by wind has led to displacement of the submergents from those areas. In view of these findings, the maintenance and preservation of the steep Crescent Lake basin whose substratum is dominated by sand thus hosting most submergents remain important, if the whole functional purpose of the macrophytes is to be sustained. Résumé On a montré que les macrophytes jouent un rôle économique important dans le lac Naivasha. Par conséquent, diverses études ont été réalisées sur l'impact des facteurs biotiques sur les macrophytes, mais les études correspondantes sur les paramètres environnementaux sont à la traîne. Pour essayer de compenser cette lacune, en 2003, on a réalisé un échantillonnage des espèces flottantes et submergées sur huit sites d'échantillonnage pour étudier comment elles étaient influencées par un ensemble de facteurs environnementaux. La texture du sol (sédiments sableux, P < 0,05, coefficient de régression = 0,749) et le vent étaient les paramètres environnementaux les plus important quant à l'influence sur la distribution et l'abondance des macrophytes flottants. La combinaison de la texture du sol et de la pente du fond du lac expliquait la plus grande partie (86,3%) de la variation rencontrée chez les espèces submergées. Le déplacement continuel des jacinthes d'eau, qui est la plante flottante dominante, vers la partie ouest par le vent a entraîné le déménagement des espèces submergées hors de cette partie du lac. Au vu de ces résultats, il est important d'assurer l'entretien et la préservation de la pente raide du bassin du lac en forme de croissant si l'on peut conserver l'ensemble de la fonction des macrophytes. [source] Abiotic and biotic drivers of seedling survival in a hurricane-impacted tropical forestJOURNAL OF ECOLOGY, Issue 6 2009Liza S. Comita Summary 1. ,Many forests experience periodic, large-scale disturbances, such as hurricanes and cyclones, which open the forest canopy, causing dramatic changes in understorey light conditions and seedling densities. Thus, in hurricane-impacted forests, large variations in abiotic and biotic conditions likely shape seedling dynamics, which in turn will contribute to patterns of forest recovery. 2. ,We monitored 13 836 seedlings of 82 tree and shrub species over 10 years following Hurricane Georges in 1998 in a subtropical, montane forest in Puerto Rico. We quantified changes in the biotic and abiotic environment of the understorey and linked seedling dynamics to changes in canopy openness and seedling density, and to spatial variation in soil type, topography and tree density. 3. ,Canopy openness was highest when first measured after Hurricane Georges and dropped significantly within c. 3 years, while seedling densities remained high for c. 5 years post-hurricane. When all species and census intervals were analysed together, generalized linear mixed effects models revealed that canopy openness, seedling and adult tree densities were significant drivers of seedling survival. 4. ,The relative importance of abiotic and biotic factors changed over time. Separate analyses for each census interval revealed that canopy openness was a significant predictor of survival only for the first census interval, with lower survival at the highest levels of canopy openness. The effect of conspecific seedling density was significant in all intervals except the first, and soil type only in the final census interval. 5. ,When grouping species into life-history guilds based on adult tree susceptibility to hurricane damage, we found clear differences among guilds in the effects of biotic and abiotic factors on seedling survival. Seedlings of hurricane-susceptible and intermediate guilds were more strongly influenced by canopy openness, while seedlings of the hurricane-resistant group were less affected by conspecific seedling density. Individual species-level analyses for 12 common species, however, showed considerable variation among species within guilds. 6. ,Synthesis. Our results suggest that hurricanes shape species composition by altering understorey conditions that differentially influence the success of seedlings. Thus, predicted increases in the intensity and frequency of hurricanes in the Caribbean will likely alter seedling dynamics and ultimately the species composition in hurricane-impacted forests. [source] Local adaptation to biotic factors: reciprocal transplants of four species associated with aromatic Thymus pulegioides and T. serpyllumJOURNAL OF ECOLOGY, Issue 5 2008Eva Grøndahl Summary 1A plant producing secondary compounds may affect the fitness of other plants in the vicinity, and, likewise, associated plants may evolve adaptation to the presence of their ,chemical neighbour'. Species of the genus Thymus are aromatic plants, well known for their production of aromatic oils whose constitution is dominated by mono- or sesquiterpenes. A polymorphism for the production of the dominant terpene in the oil exists both within and between thyme species. 2Here we examine the effects of two different terpenes produced by Thymus pulegioides and T. serpyllum on the performance of four associated plant species: Achillea millefolium, Agrostis capillaris, Galium verum and Plantago lanceolata. In a reciprocal transplant experiment we studied how plants naturally occurring together with thyme producing either carvacrol or b-caryophyllene perform on soil treated with these compounds. 3We found evidence of local adaptation to the ,home' terpene. Plants originating from sites where they grow together with carvacrol-producing thyme plants also perform better on soil treated with carvacrol. One of the associated species (A. millefolium) also showed evidence of local adaptation to the sesquiterpene b-caryophyllene . 4Seed germination and root biomass showed an adaptive response to soil treatment. Vegetation analysis supported the results of the reciprocal transplant experiment. When the associated species performed best on ,home' soil, thyme and the associated species also showed a positive spatial association at natural sites of origin. Moreover, coefficients of variation in plant traits were significantly lower on ,home' soil compared to other soils for both A. capillaris and A. millefolium, but higher for G. verum. 5Synthesis. Our results show that plant species can adapt to the presence of neighbour plants that produce specific chemical compounds. This supports the idea that local plant communities may be a lot more co-evolved than was previously thought. [source] The role of rainfall and predators in determining synchrony in reproduction of savanna trees in Serengeti National Park, TanzaniaJOURNAL OF ECOLOGY, Issue 1 2007SIMON A. R. MDUMA Summary 1We examined the factors determining synchrony in reproduction in nine Acacia and six other tree species in the Serengeti ecosystem. 2We test two hypotheses: (i) an abiotic hypothesis where the primary determinant of synchrony is an adaptation to water availability; and (ii) biotic hypotheses where these adaptations to water can be further refined by additional adaptations to avoid predators, or attract seed and fruit dispersers. 3Flowering and fruiting were recorded monthly for individually marked trees during 1997,2004. Flowering in different species occurs semi-annually, annually or, in the case of one species, once every 2 years. For most species synchrony of flowering was correlated with seasonal rainfall, with lags related to the mean height of the species; small species flowered during the rains while larger species flowered in the dry season. Fruiting seasons occurred at the end of the rains irrespective of the flowering season. 4Most species showed flowering synchrony greater than expected from the distribution of rainfall. This may be related to avoidance of insect seed predators through predator satiation. Two Acacias showed multi-annual fruiting (masting), possibly as a predator avoidance mechanism. Acacia tortilis has two flowering seasons: a dry season flowering with early abortion of pods and a wet season flowering producing successful fruits. 5Two species of Commiphora appeared to be synchronized so as to attract birds that disperse seeds. Acacia tortilis produced indehiscent pods attractive to ungulates, possibly to kill bruchid beetles during digestion and so increase seed viability. 6Our results suggest that synchrony in these trees is caused by a strong interaction between abiotic and biotic factors. Closely related species have different reproductive patterns of synchrony that seem to be adapted to different combinations of rainfall, predators and dispersers. Rainfall is the primary determinant but the activities of predators and dispersers increase the degree of synchrony. [source] Herbivory influences tree linesJOURNAL OF ECOLOGY, Issue 6 2004DAVID M. CAIRNS Summary 1Transitions between major vegetation types, such as the tree line, are useful systems for monitoring the response of vegetation to climate change. Tree lines have, however, shown equivocal responses to such change. 2Tree lines are considered to be primarily thermally controlled, although recent work has highlighted the importance of biotic factors. Dispersal limitation and the invasibility of the tundra matrix have been implicated and here we propose herbivory as an additional control at some tree lines. 3We propose a conceptual model in which differing relative impacts of foliage consumption, availability of establishment sites, trampling, dispersal and seed predation can lead to very different tree-line responses. 4The presence of large numbers of small trees above the current tree line at a site in northern Sweden that experiences limited reindeer (Rangifer tarandus) herbivory suggests range expansion. Other locations in the same region with higher reindeer populations have considerably fewer small trees, suggesting that range expansion is occurring much more slowly, if at all. 5The use of tree lines as indicators of climate change is confounded by the activity of herbivores, which may either strengthen or nullify the impacts of a changed climate. Similar arguments are likely to be applicable to other ecotones. [source] Morphological variation of perch Perca fluviatilis in humic lakes: the effect of predator density, competition and prey abundanceJOURNAL OF FISH BIOLOGY, Issue 4 2010J. Kekäläinen Between and within-lake variations in morphology of perch Perca fluviatilis were studied in four humic lakes in eastern Finland. Perca fluviatilis were more streamlined and smaller headed in a lake with the highest abundance of cyprinids, but lowest abundance of predators (Lake Tuopanjärvi), indicating adaptation to planktivorous feeding and low predator density. Highest bodied fish were found from a lake with the lowest cyprinid but highest predator abundance (Lake Koppelojärvi), which conversely indicates adaptation to more effective predator avoidance. Furthermore, the length of the paired fins was longest in Lake Kinnasjärvi and Lake Tuopanjärvi, where the abundance of benthic macroinvertebrates was lowest, suggesting selection for more effective benthivory. Clear morphological differences of P. fluviatilis between habitats were found only in Lake Kinnasjärvi, whereas in Lake Koppelojärvi and Lake Tuopanjärvi only the length of the paired fins differed and in Lake Harkkojärvi no differences were found. Taken together, these results suggest that inter and intrapopulation morphological differences are probably highly dependent on different biotic factors (i.e. predation risk, resource availability and competition). Spatial and temporal variations in these factors may have a great effect on body morphology of P. fluviatilis. [source] CHANGES IN THE MORPHOLOGY AND POLYSACCHARIDE CONTENT OF MICROCYSTIS AERUGINOSA (CYANOBACTERIA) DURING FLAGELLATE GRAZING,JOURNAL OF PHYCOLOGY, Issue 3 2008Zhou Yang To investigate the changes in the morphology and polysaccharide content of Microcystis aeruginosa (Kütz.) Kütz. during flagellate grazing, cultures of M. aeruginosa were exposed to grazing Ochromonas sp. for a period of 9 d under controlled laboratory conditions. M. aeruginosa responded actively to flagellate grazing and formed colonies, most of which were made up of several or dozens of cells, suggesting that flagellate grazing may be one of the biotic factors responsible for colony formation in M. aeruginosa. When colonies were formed, the cell surface ultrastructure changed, and the polysaccharide layer on the surface of the cell wall became thicker. This change indicated that synthesis and secretion of extracellular polysaccharide (EPS) of M. aeruginosa cells increased under flagellate grazing pressure. The contents of soluble extracellular polysaccharide (sEPS), bound extracellular polysaccharide (bEPS), and total polysaccharide (TPS) in colonial cells of M. aeruginosa increased significantly compared with those in single cells. This finding suggested that the increased amount of EPS on the cell surface may play a role in keeping M. aeruginosa cells together to form colonies. [source] The importance of biological inertia in plant community resistance to invasionJOURNAL OF VEGETATION SCIENCE, Issue 3 2003Betsy Von Holle Abstract. Insights into the ecology of historic invasions by introduced species can be gained by studying long-term patterns of invasions by native species. In this paper, we review literature in palaeo-ecology, forest-stand simulation modelling, and historical studies of plant species invasions to illustrate the relevance of biological inertia in plant communities to invasion ecology. Resistance to invasion occurs in part because of environmental, demographic, and biotic factors influencing the arrival and establishment of invading species. We propose that biological inertia within the resident community is a fourth component of resistance to invasion, because of the lag time inherent in eliminating resident species and perhaps their traces after environmental conditions become suitable for invasion by immigrating species. Whether or not an introduced species invades can be conditioned by the presence of the pre-existing community (and/or its legacy) in addition to the other biotic and abiotic factors. [source] The effect of soil on the growth performance of tropical species with contrasting distributionsOIKOS, Issue 10 2008Tania Brenes-Arguedas Within the tropics, a marked gradient in rainfall between dry and wet forests correlates with a well documented turnover of plant species. While water availability along these gradients is an important determinant of species distributions, other abiotic and biotic factors correlate with rainfall and may also contribute to limit species distribution. One of these is soil fertility, which is often lower in the wetter forests. To test its possible role in species distribution along a rainfall gradient, we performed a screen-house experiment where we measured the growth performance of seedlings of 23 species with contrasting distributions across the Isthmus of Panama. We grew seedlings in soils collected from the drier Pacific side and the wetter Atlantic side. Differences in soil fertility across the Isthmus were large enough to significantly influence the growth performance of the seedlings. However, we found no evidence of home-soil advantage among species with contrasting distributions. Dry-distribution species grew on average slower than wet-distribution species suggesting a cost to drought adaptations. The response to soil differences correlated with the growth rate of the species, such that fast-growing species responded more to changes in soil quality. We hypothesize that inherently slow growth rates of some dry-distribution tropical species may be a more important factor limiting their colonization of wetter sites along the rainfall gradient. [source] Phenology of neotropical pepper plants (Piperaceae) and their association with their main dispersers, two short-tailed fruit bats, Carollia perspicillata and C. castanea (Phyllostomidae)OIKOS, Issue 2 2004Wibke Thies To relate differences in phenological strategies of a group of closely related plants to biotic (pollinators, dispersers) and abiotic (water, light) factors, we studied leafing, flowering, and fruiting phenology of 12 species of Piper (Piperaceae) in a neotropical lowland forest in Panama for 28 months. We asked how Piper may partition time and vertebrate frugivores to minimize possible competition for dispersal agents. Based on habitat preferences and physiological characteristics we discriminate between forest Piper species (eight species) and gap Piper species (four species). Forest Piper species flowered synchronously mostly at the end of the dry season. Gap Piper species had broader or multiple flowering peaks distributed throughout the year with a trend towards the wet season. Both groups of Piper species showed continuous fruit production. Fruiting peaks of forest Piper species were short and staggered. Gap Piper species had extended fruiting seasons with multiple or broad peaks. Both groups of Piper species also differed in their time of ripening and disperser spectrum. Forest Piper species ripened in late afternoon and had a narrow spectrum consisting mainly of two species of frugivorous bats: Carollia perspicillata and C. castanea (Phyllostomidae). Fruits of gap Piper species, in contrast, ripened early in the morning and were eaten by a broader range of diurnal and nocturnal visitors, including bats, birds, and ants. We conclude that the differences in flowering phenology of forest and gap Piper species are primarily caused by abiotic factors, particularly the availability of water and light, whereas differences in fruiting patterns are mostly influenced by biotic factors. The staggered fruiting pattern of forest Piper species may reflect competition for a limited spectrum of dispersers. The long and overlapping fruiting periods of gap Piper species are associated with a larger spectrum of dispersers and may be a strategy to overcome the difficulty of seed dispersal into spatially unpredictable germination sites with suitable light conditions. [source] Cold stress and acclimation , what is important for metabolic adjustment?PLANT BIOLOGY, Issue 3 2010A. Janská Abstract As sessile organisms, plants are unable to escape from the many abiotic and biotic factors that cause a departure from optimal conditions of growth and development. Low temperature represents one of the most harmful abiotic stresses affecting temperate plants. These species have adapted to seasonal variations in temperature by adjusting their metabolism during autumn, increasing their content of a range of cryo-protective compounds to maximise their cold tolerance. Some of these molecules are synthesised de novo. The down-regulation of some gene products represents an additional important regulatory mechanism. Ways in which plants cope with cold stress are described, and the current state of the art with respect to both the model plant Arabidopsis thaliana and crop plants in the area of gene expression and metabolic pathways during low-temperature stress are discussed. [source] | ||||||||||||||||||||||||||||